Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,666,421 – 18,666,512 |
Length | 91 |
Max. P | 0.913053 |
Location | 18,666,421 – 18,666,512 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 92.67 |
Mean single sequence MFE | -36.91 |
Consensus MFE | -32.36 |
Energy contribution | -32.81 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.21 |
Structure conservation index | 0.88 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18666421 91 + 22224390 UGUUAACAGUGAAACCCAUCCGCUCCGCUCCAGGCCCCAAGAUCGGGAGAGUAAUGAGCGGAGCGGUUCGGUUCGGAUUGGAUGUGAGUGU ......((((..((((...(((((((((((...(((((......)))...))...)))))))))))...))))...))))........... ( -34.90) >DroSec_CAF1 11428 91 + 1 UGUUAACAGUGAAUCCCAUCCGCUCCGCUCUAGGCCCCAAGAUCGAGAGAGCGCUGAGCGGAGCGGUUCGAUUGGGAUGGGAUGUGAGUGG .....(((....((((((.(((((((((((.((((.......((....)))).)))))))))))))......))))))....)))...... ( -37.91) >DroSim_CAF1 9552 91 + 1 UGUUAACAGUGAAUCCCAUCCGCUCCGCUCUAGGCCCCAAGAUCGAGAGAGCGCUGAGCGGAGCGGUUCGAUUGGGAUGGGAUGUGAGUGG .....(((....((((((.(((((((((((.((((.......((....)))).)))))))))))))......))))))....)))...... ( -37.91) >consensus UGUUAACAGUGAAUCCCAUCCGCUCCGCUCUAGGCCCCAAGAUCGAGAGAGCGCUGAGCGGAGCGGUUCGAUUGGGAUGGGAUGUGAGUGG .....(((....((((((.(((((((((((...((.......((....))))...)))))))))))......))))))....)))...... (-32.36 = -32.81 + 0.45)
Location | 18,666,421 – 18,666,512 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 92.67 |
Mean single sequence MFE | -37.73 |
Consensus MFE | -31.17 |
Energy contribution | -32.17 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -4.45 |
Structure conservation index | 0.83 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913053 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18666421 91 - 22224390 ACACUCACAUCCAAUCCGAACCGAACCGCUCCGCUCAUUACUCUCCCGAUCUUGGGGCCUGGAGCGGAGCGGAUGGGUUUCACUGUUAACA .................(((((.(.(((((((((((.......(((((....)))))....))))))))))).).)))))........... ( -35.20) >DroSec_CAF1 11428 91 - 1 CCACUCACAUCCCAUCCCAAUCGAACCGCUCCGCUCAGCGCUCUCUCGAUCUUGGGGCCUAGAGCGGAGCGGAUGGGAUUCACUGUUAACA ........((((((((((....)....(((((((((((.((((.(........))))))).))))))))))))))))))............ ( -39.00) >DroSim_CAF1 9552 91 - 1 CCACUCACAUCCCAUCCCAAUCGAACCGCUCCGCUCAGCGCUCUCUCGAUCUUGGGGCCUAGAGCGGAGCGGAUGGGAUUCACUGUUAACA ........((((((((((....)....(((((((((((.((((.(........))))))).))))))))))))))))))............ ( -39.00) >consensus CCACUCACAUCCCAUCCCAAUCGAACCGCUCCGCUCAGCGCUCUCUCGAUCUUGGGGCCUAGAGCGGAGCGGAUGGGAUUCACUGUUAACA ........(((((((((..........(((((((((...(((((.........)))))...))))))))))))))))))............ (-31.17 = -32.17 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:59 2006