Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,662,533 – 18,662,626 |
Length | 93 |
Max. P | 0.973312 |
Location | 18,662,533 – 18,662,626 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 95.70 |
Mean single sequence MFE | -19.92 |
Consensus MFE | -17.72 |
Energy contribution | -18.12 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.89 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18662533 93 + 22224390 GUAUAGAGCAUAUUGAACUUAUAGAGCAUAUAGAAAAAUAGGAACGAUGUGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA .((((..((((((((..(((((....(.....)....)))))..))))))))...))))..((.((((..(((.....)))..))))...)). ( -20.60) >DroSec_CAF1 7499 93 + 1 GUAUAGAGCAUAUUGAACUUAUAGAGCAUAUAGAAAAAUAGGAACGAUGUGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA .((((..((((((((..(((((....(.....)....)))))..))))))))...))))..((.((((..(((.....)))..))))...)). ( -20.60) >DroSim_CAF1 5685 93 + 1 GUAUAGAGCAUAUUGAACUUAUAGAGCAUAUAGAAAAAUAGGAACGAUGUGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA .((((..((((((((..(((((....(.....)....)))))..))))))))...))))..((.((((..(((.....)))..))))...)). ( -20.60) >DroEre_CAF1 7824 85 + 1 --------CAUAUUGAACUUAUAUAGCAUAUAGAAAAAUAGGAACGAUGAGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA --------(((((((..(((((....(.(((......))).)....))))).)))))))..((.((((..(((.....)))..))))...)). ( -17.20) >DroYak_CAF1 7765 93 + 1 GUAUAGAGCAUAUUGAACUUAUAGAGCAUAUAGAAAAAUAGGAACGAUGUGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA .((((..((((((((..(((((....(.....)....)))))..))))))))...))))..((.((((..(((.....)))..))))...)). ( -20.60) >consensus GUAUAGAGCAUAUUGAACUUAUAGAGCAUAUAGAAAAAUAGGAACGAUGUGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA .......((((((((..(((((....(.....)....)))))..)))))))).........((.((((..(((.....)))..))))...)). (-17.72 = -18.12 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:55 2006