Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,637,986 – 18,638,091 |
Length | 105 |
Max. P | 0.591358 |
Location | 18,637,986 – 18,638,091 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.29 |
Mean single sequence MFE | -28.82 |
Consensus MFE | -16.74 |
Energy contribution | -18.10 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.96 |
Structure conservation index | 0.58 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18637986 105 - 22224390 GAUCGGCUUCACGAGCUCUAAUGCAUGCCAAUUGGAUUCAAUUAGCGCGCUAC-UACUACUUCUAAAAUAGAAAUAGACAAUU--UUUGUCGAGUUGAUGGAUGU------------UGC .((((((((.((((((.(((((.....((....)).....))))).)).....-..(((.(((((...))))).)))......--.)))).))))))))......------------... ( -24.00) >DroSec_CAF1 13364 102 - 1 GAUCGGCUUCACGAGCGCUAAUGCAUGCAAAUUGGAUUCAAUUAGCGCGCUAC----UACUUCUAAAAUAGAAAUAGAAAAUU--UUUGUCGAGUUGAUGGAUGC------------UGC .((((((((.((((((((((((..((.(.....).))...))))))))....(----((.(((((...))))).)))......--.)))).))))))))......------------... ( -27.00) >DroSim_CAF1 14189 102 - 1 GAUCGGCUCCACGAGCGCUAAUGCAUGCAAAUUGGAUUCAAUUAGCGCGCUAC----UAUUUUUAAAAUAGAAAUAGACAAUU--UUUGUGGAGUUGAUGGAUGC------------UGC .(((((((((((((((((((((..((.(.....).))...))))))))....(----((((((((...)))))))))......--.)))))))))))))......------------... ( -36.30) >DroYak_CAF1 14658 116 - 1 GGUCGGCUCCACGAGCGCUAAUGCAUGCAAAUUGGAUUCAAUUAGCGCGCUAC----UACUUCUAAAAUAGAAAUAGACAAUUUUUUUGUCGAGUUGAUGGAUGUAGCUACUGCUAUUGC .((((((((.((((((((((((..((.(.....).))...))))))))....(----((.(((((...))))).))).........)))).))))))))....(((((....)))))... ( -33.40) >DroAna_CAF1 27745 97 - 1 GCGCGGCUCCACGAGCGCUAAUGCAUGCAAAUUGAAUUCAAUUAGCGGCCAACAGACUACUUUUAAAAUAGAAAUAGACAAUU--UU---------GCUGUGCGC------------UGC ((((((((........((....))..((.(((((....))))).)))))).((((.(((.(((((...))))).))).((...--.)---------)))))))))------------... ( -23.40) >consensus GAUCGGCUCCACGAGCGCUAAUGCAUGCAAAUUGGAUUCAAUUAGCGCGCUAC____UACUUCUAAAAUAGAAAUAGACAAUU__UUUGUCGAGUUGAUGGAUGC____________UGC .((((((((.((((((((((((..((.(.....).))...))))))))............(((((...))))).............)))).))))))))..................... (-16.74 = -18.10 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:31 2006