Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,637,871 – 18,637,965 |
Length | 94 |
Max. P | 0.900347 |
Location | 18,637,871 – 18,637,965 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 93.66 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -25.04 |
Energy contribution | -24.52 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.22 |
Mean z-score | -1.38 |
Structure conservation index | 0.91 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18637871 94 + 22224390 CCCCAUAAUUCUA-UCCAUGUGACCACAGAUCUGGAACGUACUCGGCAAGUGAGAGUGUGAGUAUUACAGCACUCUCCAUGGCGACAACGACAAU ........(((((-....(((....)))....)))))(((..(((.((.(.((((((((..(.....).))))))))).)).)))..)))..... ( -24.80) >DroSec_CAF1 13251 94 + 1 CCCCAUGAUUCCC-UCCAUGUGACCGCAGAUCUGGAACGUACUCGGCAAGUGAGAGUGCGAGUAUUACAGCACUCUCCAUGGCGACAGCGACAAU ........((((.-....(((....))).....))))(((..(((.((.(.((((((((..........))))))))).)).)))..)))..... ( -28.20) >DroSim_CAF1 14082 94 + 1 CCCCAUGAUUCCC-UCCAUGUGACCGCAGAUCUGGAACGUACCCGGCAAGUGAGAGUGCGAGUAUUACAGCACUCUCCAUGGCGACAACGACAAU ........((((.-....(((....))).....))))(((...((.((.(.((((((((..........))))))))).)).))...)))..... ( -25.90) >DroEre_CAF1 13753 94 + 1 CCCCAUCGUUCCCUUCCAAGUGACCGCAAAUGUGG-ACGUACUCGGCAAGUGAGAGUGCGAGUAUUACAGCACUCUCCAUGGCGACAACGACAAU .....(((((.........(((.((((....))))-...)))(((.((.(.((((((((..........))))))))).)).))).))))).... ( -29.10) >DroYak_CAF1 14544 95 + 1 CCCCAUCAUUCCCUUCCAUGUGACCGCAGAUGUGGAACGUACUCGGCAAGUGAGAGUGCGAGUAUUACAGCACUCUCCAUGGCGACAACGACAAU .............((((((((........))))))))(((..(((.((.(.((((((((..........))))))))).)).)))..)))..... ( -29.30) >consensus CCCCAUCAUUCCC_UCCAUGUGACCGCAGAUCUGGAACGUACUCGGCAAGUGAGAGUGCGAGUAUUACAGCACUCUCCAUGGCGACAACGACAAU ..(((.((((........(((....))))))))))..(((..(((.((.(.((((((((..........))))))))).)).)))..)))..... (-25.04 = -24.52 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:30 2006