Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,005,868 – 2,005,960 |
Length | 92 |
Max. P | 0.846637 |
Location | 2,005,868 – 2,005,960 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 71.78 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -5.64 |
Energy contribution | -6.20 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.89 |
Structure conservation index | 0.27 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2005868 92 + 22224390 UGAGUCUUAGAGAUGACACUGCGUCGUGCGGAAAUCAUCGCAACUGAAUAAA---AAAACUAUUUUUGUGAUACUAAAUAUUAUUGCAAA---------------AAGUA ......((((.(((((..((((.....))))...)))))....)))).....---.......((((((..(((........)))..))))---------------))... ( -17.20) >DroSec_CAF1 6703 94 + 1 UGAGUCUUAGCGAUGACACUGCGUCGAGCGGAAAUCAUCGCAAGUGAAUAAAA-UAAAACUAUUUUUGUGAUACUAAAUAUUAUUGCAAA---------------AGAUA ...(((((.(((((((..((((.....))))...)))))))............-...........(((..(((........)))..))))---------------)))). ( -23.80) >DroSim_CAF1 5608 95 + 1 UGAGUCUUAGCGAUGACACUGCGUCGAGCGAAAAUCAUCGCAAGUGCAUAAAAAAAAAACUAUUUUUGUGAUACUAAAUAUUAUUGCAAA---------------AGAUA ...(((((.(((((((...(((.....)))....))))))).((((((((((((........)))))))).))))..............)---------------)))). ( -23.50) >DroEre_CAF1 6685 108 + 1 UGAGUGCUAGAGAUGACACUGCGUCGUGCUGAAAUAAAUGCAGGUAAAUUAAA-AAGAAAUUUGAUUUUACCAUUAAAUAUUAAUGCAGAUGGAAGUUAUAGCUCAGAU- ...(.((((..(((..((((((((..(((..........)))((((((....(-((....)))...))))))...........)))))).))...))).)))).)....- ( -23.60) >DroYak_CAF1 6671 103 + 1 UGAGUGCUAGAGAUGACACUUCGUCGUGUUGAAAUCAGUGCAAGUGAAUAAAA-AAAA------AUUUUCCUGUUUAAUAUUAAUGCAAUUAGAAGCUAUAUCUCAGAUU .........((((((...((((...(..(((....)))..)...((((((..(-((..------..)))..))))))...............))))...))))))..... ( -16.00) >consensus UGAGUCUUAGAGAUGACACUGCGUCGUGCGGAAAUCAUCGCAAGUGAAUAAAA_AAAAACUAUUUUUGUGAUACUAAAUAUUAUUGCAAA_______________AGAUA ...((..(((.((((......))))..((((......)))).......................................)))..))....................... ( -5.64 = -6.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:36 2006