Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,401,682 – 18,401,772 |
Length | 90 |
Max. P | 0.530000 |
Location | 18,401,682 – 18,401,772 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 82.32 |
Mean single sequence MFE | -25.39 |
Consensus MFE | -18.60 |
Energy contribution | -17.58 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.43 |
Mean z-score | -1.35 |
Structure conservation index | 0.73 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18401682 90 - 22224390 UGCCACUUUGGGCCCGCU-CCGAUGGGCCAAAGAUUAAAAAGGGAUUCAUGUGGCCACCUUCAAUGCGAAUCUC-------------UGUGCAAAUUGCCCAUA ((((.((((((.((((..-....)))))))))).......((((((((...(((......)))....)))))))-------------)).)))........... ( -24.70) >DroGri_CAF1 20572 99 - 1 UGCCAUUUUGGCUUUG---UAUAUUGGCCAAAGAUUAAAAAGGGAUUUCUUUGGCGAGGGU--GUGUGAAUUUUGUAGAGCUGCUGAUAGGCAAAUGGCCUAUA .(((((((.(((((((---.......((((((((.............)))))))).(((((--......))))).)))))))(((....))))))))))..... ( -27.52) >DroSec_CAF1 24723 90 - 1 UGCCACUUUGGGCCCGCU-CCGAUGGGCCAAAGAUUAAAAAGGGAUUCAUGCGGCCACCUUCAAUGCGAAUCUC-------------UGUGCAAAUUGCCCAUA ((((.((((((.((((..-....)))))))))).......((((((((..(((...........))))))))))-------------)).)))........... ( -24.90) >DroSim_CAF1 22829 90 - 1 UGCCACUUUGGGCCCGCU-CCGAUGGGCCAAAGAUUAAAAAGGGAUUCAUGCGGCCACCUUCAAUGCGAAUCUC-------------UGUGCAAAUUGCCCAUA ((((.((((((.((((..-....)))))))))).......((((((((..(((...........))))))))))-------------)).)))........... ( -24.90) >DroEre_CAF1 27467 91 - 1 UGCCACUUUGGGCCCCCUUUCGAUGGGCCAAAGAUUAAAAAGGGAUUCAUGCAGCCACCUCCAAUGCGAAUCUC-------------UGUGCAAAUUGCCCAUA ((((.((((((.(((.........))))))))).......((((((((..(((...........))))))))))-------------)).)))........... ( -24.10) >DroYak_CAF1 6064 90 - 1 UGCCACUUUGGGCCCACU-CCGAUGGGCCGAAGAUUAAAAAGGGAUUCAUGCAGCCACCUCCAAUGCGAAUCUC-------------UGUGCAAAUUGCCCAUA ((((.((((((.((((..-....)))))))))).......((((((((..(((...........))))))))))-------------)).)))........... ( -26.20) >consensus UGCCACUUUGGGCCCGCU_CCGAUGGGCCAAAGAUUAAAAAGGGAUUCAUGCGGCCACCUUCAAUGCGAAUCUC_____________UGUGCAAAUUGCCCAUA (((..((((((.((((.......))))))))))........(((((((..(((...........))))))))))................)))........... (-18.60 = -17.58 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:41 2006