Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,394,175 – 18,394,290 |
Length | 115 |
Max. P | 0.778432 |
Location | 18,394,175 – 18,394,290 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.11 |
Mean single sequence MFE | -27.14 |
Consensus MFE | -23.21 |
Energy contribution | -23.21 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.79 |
Structure conservation index | 0.85 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18394175 115 + 22224390 AUAACAUCGAACGAACCAACGGCGACAACAAAACGACACAAGGCAUAAAACAACUUAAUAAAAAUUCCACUGCUGUGUCGUACAUCGUUGGCAUUAUCGCUCGAAAUGGUGAAGG----- ......((((.(((.((((((....)......((((((((..(((.........................))))))))))).....))))).....))).))))...........----- ( -24.11) >DroSim_CAF1 19544 115 + 1 AUAACAGCGAACGAACCAACGGCGACAACAAAACGACACAAGGCAUAAAACAACUUAAUAAAAAUUCCACUGCUGUGUCGUACAUCGUUGGCAUUAUCGCUCGAAAUGGCGAAGG----- ......((.(((((......(....)......((((((((..(((.........................)))))))))))...))))).))....(((((......)))))...----- ( -27.11) >DroYak_CAF1 36740 120 + 1 AUAACAGCGAGCGAACCAACGACGGCAACAAAACGACACAAGGCAUAAAACAACUUAAUAAAAAUUCCACUGCUGUGUCGUACAUCGUUGGCAUUAUCGUUGCAAAUGGUGAAAGGGGGG ....((((((.....(((((((.(....)...((((((((..(((.........................)))))))))))...))))))).....)))))).................. ( -30.21) >consensus AUAACAGCGAACGAACCAACGGCGACAACAAAACGACACAAGGCAUAAAACAACUUAAUAAAAAUUCCACUGCUGUGUCGUACAUCGUUGGCAUUAUCGCUCGAAAUGGUGAAGG_____ .....(((((.....(((((((.(....)...((((((((..(((.........................)))))))))))...))))))).....)))))................... (-23.21 = -23.21 + 0.00)
Location | 18,394,175 – 18,394,290 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.11 |
Mean single sequence MFE | -33.47 |
Consensus MFE | -28.53 |
Energy contribution | -29.53 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.28 |
Structure conservation index | 0.85 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778432 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18394175 115 - 22224390 -----CCUUCACCAUUUCGAGCGAUAAUGCCAACGAUGUACGACACAGCAGUGGAAUUUUUAUUAAGUUGUUUUAUGCCUUGUGUCGUUUUGUUGUCGCCGUUGGUUCGUUCGAUGUUAU -----...........((((((((....(((((((.((.(((((((((((.((((((..((....))..)))))))))..))))))))........)).)))))))))))))))...... ( -34.70) >DroSim_CAF1 19544 115 - 1 -----CCUUCGCCAUUUCGAGCGAUAAUGCCAACGAUGUACGACACAGCAGUGGAAUUUUUAUUAAGUUGUUUUAUGCCUUGUGUCGUUUUGUUGUCGCCGUUGGUUCGUUCGCUGUUAU -----............(((((((....(((((((.((.(((((((((((.((((((..((....))..)))))))))..))))))))........)).))))))))))))))....... ( -32.50) >DroYak_CAF1 36740 120 - 1 CCCCCCUUUCACCAUUUGCAACGAUAAUGCCAACGAUGUACGACACAGCAGUGGAAUUUUUAUUAAGUUGUUUUAUGCCUUGUGUCGUUUUGUUGCCGUCGUUGGUUCGCUCGCUGUUAU .................(((.(((....((((((((((.(((((((((((.((((((..((....))..)))))))))..))))))))........))))))))))....))).)))... ( -33.20) >consensus _____CCUUCACCAUUUCGAGCGAUAAUGCCAACGAUGUACGACACAGCAGUGGAAUUUUUAUUAAGUUGUUUUAUGCCUUGUGUCGUUUUGUUGUCGCCGUUGGUUCGUUCGCUGUUAU .................(((((((....(((((((.((.(((((((((((.((((((..((....))..)))))))))..))))))))........)).))))))))))))))....... (-28.53 = -29.53 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:40 2006