Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,373,286 – 18,373,393 |
Length | 107 |
Max. P | 0.941735 |
Location | 18,373,286 – 18,373,393 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 80.66 |
Mean single sequence MFE | -25.07 |
Consensus MFE | -16.31 |
Energy contribution | -16.87 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.13 |
Mean z-score | -2.45 |
Structure conservation index | 0.65 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941735 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18373286 107 - 22224390 AGGGGCAAGAUCGGAUCCCCAAGAUCCCCACCAUCAUCAUUAUCGUCCUCAUCAUCGGGUUGCCGUGUUCCUCAGCCCGCAGCCCGC-----AGCCCUACCAUCUAUCCCUU .(((((......(((((.....)))))............................((((((((.(.((......))).)))))))).-----.))))).............. ( -30.50) >DroSec_CAF1 17990 100 - 1 AGGGGCAAGAUCGGAUCCCCAAGAUCCCCACCACCAUCAUUAUCGUCCUCAUCAUCGGGUUGCCGUGUUCCUCAGCCCGCAGCUC------------CCCCCUCUAUCCCUU (((((..((...(((((.....)))))............................(((((((..(....)..)))))))...)).------------.)))))......... ( -23.90) >DroYak_CAF1 16887 104 - 1 AGGGGCAAGAUCGGAUCCCCAAGAUCCCCACCAUCAUCAUUAUCGUCCUCAUCAUCGGG--------UUCCUCAGCCCUCAGUUCUCCCCAAUCCCUUACCCUUACUCCCUU .((((..(((.((((((.....))))).............................(((--------(......))))...).)))))))...................... ( -20.80) >consensus AGGGGCAAGAUCGGAUCCCCAAGAUCCCCACCAUCAUCAUUAUCGUCCUCAUCAUCGGGUUGCCGUGUUCCUCAGCCCGCAGCUC_C_______CC_UACCCUCUAUCCCUU ..((((......(((((.....))))).............................((((((..........))))))...))))........................... (-16.31 = -16.87 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:26 2006