Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,367,152 – 18,367,296 |
Length | 144 |
Max. P | 0.927324 |
Location | 18,367,152 – 18,367,267 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 91.85 |
Mean single sequence MFE | -28.75 |
Consensus MFE | -25.43 |
Energy contribution | -26.69 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.88 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927324 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18367152 115 + 22224390 CUAAUUUGGCGCUAGGUGCGUGUGCCACUCCCCCAAUUCCAUUCAUUGAAUUGAAAUGACCCCCAUCC---CCACUGGUCAUCGUUUCCACAUGCUGGAAACUAGGCACAGUGGGCCG ......((((((.........))))))......((((((........))))))..............(---(((((((((...(((((((.....)))))))..))).)))))))... ( -35.90) >DroSec_CAF1 11771 107 + 1 CUAAUUUGGCGCUAGGUGCGUGUGCCACUCCCCCAAUUCCAUUCAUUGAAUUGAAAUGACCCCCAUCC---CCACUGGUCAUCGUUUCCACAUGCUGGAAACCAGGCACA-------- ........((((.....))))(((((.......((((((........))))))..((((((.......---.....)))))).(((((((.....)))))))..))))).-------- ( -31.50) >DroEre_CAF1 10988 107 + 1 CUAAUUUGGCGCUAGGUGCGUGUGCCACUCCACCAUUUCCAUUCAUUGAAUUGAAAUGACCCCCAUCC---CCACUGGUCAUCGUUUUCACAUGCUGCAAACCAGGCACA-------- ........((((.....))))(((((.......((((((.((((...)))).))))))..........---....((((((.(((......))).))...))))))))).-------- ( -24.50) >DroYak_CAF1 10857 109 + 1 CUAAUUUGGCGCUAGGUGCGUGUGCCACUCCCCCAUUUCCAUUCAUUGAAUUGAAAUGACCCCCAUCCUCUCCACUGGUCAUCGUUUCCACAUGCUGGCAACCA-GCACA-------- ......((((((.........))))))......((((((.((((...)))).)))))).................(((.........)))..((((((...)))-)))..-------- ( -23.10) >consensus CUAAUUUGGCGCUAGGUGCGUGUGCCACUCCCCCAAUUCCAUUCAUUGAAUUGAAAUGACCCCCAUCC___CCACUGGUCAUCGUUUCCACAUGCUGGAAACCAGGCACA________ ........((((.....))))(((((.......((((((........))))))..((((((...............)))))).(((((((.....)))))))..)))))......... (-25.43 = -26.69 + 1.25)
Location | 18,367,190 – 18,367,296 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.18 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -21.45 |
Energy contribution | -22.20 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.33 |
Structure conservation index | 0.67 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.923149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18367190 106 + 22224390 CCAUUCAUUGAAUUGAAAUGACCCCCAUCC---CCACUGGUCAUCGUUUCCACAUGCUGGAAACUAGGCACAGUGGGCCGCACAGUGGGGCCGCACAGUGGGCAUCUCA----------- ...((((......))))..((..(((((((---((((((((....(((((((.....)))))))..(((.......))))).)))))))).......)))))..))...----------- ( -36.41) >DroSec_CAF1 11809 94 + 1 CCAUUCAUUGAAUUGAAAUGACCCCCAUCC---CCACUGGUCAUCGUUUCCACAUGCUGGAAACCAGGCACA------------GUGGGGCCGCACAGUGGCCAUCUCA----------- ....(((((.......))))).........---(((((((((...(((((((.....)))))))..))).))------------))))((((((...))))))......----------- ( -33.10) >DroEre_CAF1 11026 92 + 1 CCAUUCAUUGAAUUGAAAUGACCCCCAUCC---CCACUGGUCAUCGUUUUCACAUGCUGCAAACCAGGCACA------------GUGGGGCCGCACAGUGGGCAACC------------- ....(((((.......)))))..(((((((---(((((((((...((((.((.....)).))))..))).))------------)))))).......))))).....------------- ( -27.11) >DroYak_CAF1 10895 107 + 1 CCAUUCAUUGAAUUGAAAUGACCCCCAUCCUCUCCACUGGUCAUCGUUUCCACAUGCUGGCAACCA-GCACA------------GUGGGGCCGCACAGUGGGCAUCUCAAGUGUAAGUCA ...((((......)))).((((...........((((((.....((..(((((.((((((...)))-)))..------------)))))..))..))))))((((.....))))..)))) ( -31.80) >consensus CCAUUCAUUGAAUUGAAAUGACCCCCAUCC___CCACUGGUCAUCGUUUCCACAUGCUGGAAACCAGGCACA____________GUGGGGCCGCACAGUGGGCAUCUCA___________ ....(((((.......)))))............(((((((((...(((((((.....)))))))..)))...............(((....))).))))))................... (-21.45 = -22.20 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:12 2006