Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,353,912 – 18,354,016 |
Length | 104 |
Max. P | 0.830718 |
Location | 18,353,912 – 18,354,016 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 89.78 |
Mean single sequence MFE | -38.42 |
Consensus MFE | -33.69 |
Energy contribution | -33.67 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.30 |
Mean z-score | -1.73 |
Structure conservation index | 0.88 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18353912 104 + 22224390 A-AAAUCCUCGCAGGCGGAGCACUCUUACAAGCUGAACCCUAAGCUGUUAGUACAGCUGCAGCACUGCGAGGAGCACCAGAUUCCUCUGGUGGUUGUCCUCGGCG .-...((((((((((((.(((...((.(((.(((........)))))).))....))).).)).))))))))).(((((((....)))))))((((....)))). ( -43.40) >DroSec_CAF1 6789 104 + 1 A-AAAUCCUCUCAGGCGGAACACUCUUACAAGCUGAACCCUAAGCUGCUAGUACAGCUGCAGCACUGCGAGGAGCACCAGAUUCCUCUGGUGGUGGUCCUCGGCG .-...(((((.(((..(((....))).....((((.......(((((......))))).)))).))).))))).(((((((....)))))))((.(....).)). ( -34.10) >DroAna_CAF1 17309 105 + 1 GGAUAUUUUACCAGGCGGAGCACUCCUAUAAGUUGAAUCCCAAGCUGUUGGUGCAACUGCAGCACUGCGAGGAGCAUCAGAUACCCUUGGUGGUGGUUCUGGGCG ..........(((((((((....)))..........((((((((...(((((((..(((((....))).))..))))))).....))))).))).).)))))... ( -30.70) >DroSim_CAF1 6009 104 + 1 A-AAAUCCUCGCAGGCGGAGCACUCUUACAAGCUGAACCCUAAGCUGCUAGUACAGCUGCAGCACUGCGAGGAGCACCAGAUUCCUCUGGUGGUGGUCCUCGGCG .-...((((((((((((.(((...((....((((........))))...))....))).).)).))))))))).(((((((....)))))))((.(....).)). ( -41.50) >DroEre_CAF1 6346 104 + 1 A-AAAUCCUUGCAGGCGGAGCACUCUUACAAGCUGAACCCUAAGCUGCUGGUGCAGCUGCAGCACUGCGAGGAGCACCAGAUUCCUCUGGUGGUGGUCCUCGGCG .-...(((((((((..(((....))).....((((.......((((((....)))))).)))).))))))))).(((((((....)))))))((.(....).)). ( -42.60) >DroYak_CAF1 5963 104 + 1 A-AAAUCCUUGCAGGCGGAGCAUUCUUAUAAGCUGAACCCUAAGCUACUGGUGCAGCUGCAGCACUGCGAGGAGCACCAGAUUCCCCUGGUGGUUGUCCUCGGCG .-...((((((((((((.(((...((....((((........))))...))....))).).)).))))))))).((((((......))))))((((....)))). ( -38.20) >consensus A_AAAUCCUCGCAGGCGGAGCACUCUUACAAGCUGAACCCUAAGCUGCUAGUACAGCUGCAGCACUGCGAGGAGCACCAGAUUCCUCUGGUGGUGGUCCUCGGCG .....(((((((((..(((....))).....((((.......((((((....)))))).)))).))))))))).((((((......))))))...((.....)). (-33.69 = -33.67 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:56 2006