Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,315,711 – 18,315,841 |
Length | 130 |
Max. P | 0.999867 |
Location | 18,315,711 – 18,315,807 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.98 |
Mean single sequence MFE | -41.77 |
Consensus MFE | -33.04 |
Energy contribution | -33.93 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.06 |
Mean z-score | -2.28 |
Structure conservation index | 0.79 |
SVM decision value | 2.45 |
SVM RNA-class probability | 0.994041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18315711 96 + 22224390 UCGAAGGAGCUAUGCCCCAAGCUCCAACGCUUUGGAUGGGCAAC------------------------UUCAUGGGUUCGUGUGUGGGCAACUUCAUUGACUCGUGAGUGGGCAUCUUCA ..((((..(((.(((((.....(((((....))))).)))))((------------------------(.((((((((.(((...((....)).))).))))))))))).)))..)))). ( -37.30) >DroSec_CAF1 31549 120 + 1 UCGGAGGAGCUAUGCCCCAAGCUCCAACGCUUUGGAUAGGCAACUUCAUGGGUUCGGGUGUGGGCAACUUCAUGGGUUCGUGUGUCGGCAACUUCAUGGACUCGUGAGUGGGCAUCUUCA ...((((((((.(((((...((((.(((.(....((.((....))))..).))).))))..)))))(((.((((((((((((....(....)..))))))))))))))).))).))))). ( -48.10) >DroEre_CAF1 23922 96 + 1 GCGGAGGAGCUAUGCCCCAAGCUCCAACGCUCUGGAUGGGCAUC------------------------UUUAUGGGCUCGUGAGUGGGCCUAUUCAUGGACUCGUGAGUGGGCAUCUUCA (((..((((((........))))))..))).....((((((.((------------------------.....))))))))(((...(((((((((((....)))))))))))...))). ( -39.90) >consensus UCGGAGGAGCUAUGCCCCAAGCUCCAACGCUUUGGAUGGGCAAC________________________UUCAUGGGUUCGUGUGUGGGCAACUUCAUGGACUCGUGAGUGGGCAUCUUCA ..((((..(((.((((((((((......))).)))...))))..........................((((((((((((((...((....)).))))))))))))))..)))..)))). (-33.04 = -33.93 + 0.89)
Location | 18,315,751 – 18,315,841 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.33 |
Mean single sequence MFE | -40.50 |
Consensus MFE | -24.85 |
Energy contribution | -24.63 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.11 |
Mean z-score | -2.87 |
Structure conservation index | 0.61 |
SVM decision value | 4.31 |
SVM RNA-class probability | 0.999867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18315751 90 + 22224390 CAAC------------------------UUCAUGGGUUCGUGUGUGGGCAACUUCAUUGACUCGUGAGUGGGCAUCUUCAUGGACUCGUGAGUGGGCGUCUUCAUCGACUCCUG------ ..((------------------------(.((((((((((((.....((.(((.(((......))))))..)).....)))))))))))))))(((.(((......))).))).------ ( -30.80) >DroSec_CAF1 31589 114 + 1 CAACUUCAUGGGUUCGGGUGUGGGCAACUUCAUGGGUUCGUGUGUCGGCAACUUCAUGGACUCGUGAGUGGGCAUCUUCAUGGACUCGUGAGUGGGCGUCUUCAUCGACUCCUG------ ..(((.(((((((((((((((((....))(((((((((((((....(....)..)))))))))))))....))))))....))))))))))))(((.(((......))).))).------ ( -44.30) >DroEre_CAF1 23962 96 + 1 CAUC------------------------UUUAUGGGCUCGUGAGUGGGCCUAUUCAUGGACUCGUGAGUGGGCAUCUUCAUGGACUCGUGAGUGGGUCUAUUCAUGGACUCGUGAGUGGG (((.------------------------.(((((((..(((((((((((((((((((((..(((((((........)))))))..)))))))))))))))))))))..)))))))))).. ( -46.40) >consensus CAAC________________________UUCAUGGGUUCGUGUGUGGGCAACUUCAUGGACUCGUGAGUGGGCAUCUUCAUGGACUCGUGAGUGGGCGUCUUCAUCGACUCCUG______ ............................((((((((((((((.....((...((((((....))))))...)).....)))))))))))))).(((((.......)).)))......... (-24.85 = -24.63 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:24 2006