Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,272,316 – 18,272,516 |
Length | 200 |
Max. P | 0.717530 |
Location | 18,272,316 – 18,272,420 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 80.74 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -19.02 |
Energy contribution | -18.47 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.14 |
Mean z-score | -1.66 |
Structure conservation index | 0.75 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18272316 104 - 22224390 UUUGGGUCACCUUGGUGAUAUGUUUAGUUGAGCUCACAAGCAUUUGUAGUUUAAAGACGGAGUACACGUUUUUUUUGACUCUAAUGCCGUUUGGGGUCACCUUU ...(((((((....))))).........(((.((((...(((((.(.((((.(((((((.......)))))))...))))).)))))....)))).)))))... ( -28.40) >DroSec_CAF1 40618 88 - 1 UUUGGAUCACCUUGGUGAUAUGUUUAAUAU---------GC-----CACUUUAAAGUCGGAGUGCAAGUUU--UUUGACUCUGAUGCUGUUUGGGGUCACCUUG ...(((((((....)))))..........(---------((-----.(((((......)))))))).....--..((((((..(......)..))))))))... ( -21.90) >DroSim_CAF1 15253 88 - 1 UUUGGGUCACCUUGGUGAUAUGUUUAAUAC---------GC-----CACUUUAAAGUCGGAGUGCAAGUUU--UUUGACUCUGAUGCUGUUUGGGGUCACCUUG ...((((.(((((((((.(((.....))))---------))-----)........((((((((.((((...--)))))))))))).......))))).)))).. ( -25.60) >consensus UUUGGGUCACCUUGGUGAUAUGUUUAAUAC_________GC_____CACUUUAAAGUCGGAGUGCAAGUUU__UUUGACUCUGAUGCUGUUUGGGGUCACCUUG ...(((((((....)))))...........................((((((......))))))...........(((((((((......)))))))))))... (-19.02 = -18.47 + -0.55)
Location | 18,272,420 – 18,272,516 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 82.48 |
Mean single sequence MFE | -32.73 |
Consensus MFE | -18.65 |
Energy contribution | -19.77 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.09 |
Mean z-score | -2.53 |
Structure conservation index | 0.57 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18272420 96 - 22224390 GGGGGUGACUCUUCGGCGGUGACCUUUUUAAAGAGCAACAAAUAAGGUUGAGUUCUUAAAGGUAUGCCACUUUAAAAUGGUAACCGGAUUCCAAGU--------------- ((((....))))..((((((.(((.((((((((.(((((...(((((......)))))...)).)))..)))))))).))).))))....))....--------------- ( -27.90) >DroSec_CAF1 40706 109 - 1 GG-GGUGACUCGUUAGCGGUGACCUUUUCAAAGAGCUACAGAAAAGUUUGAGUUCUUAAAGGUAUGCCACUUUAGAAUGGUACCC-GAUUCCAAGUUAUGGGUCACCUAGU .(-((((((((((.(((((((((((((...(((((((.((((....))))))))))))))))).))))......((((.(....)-.))))...))))))))))))))... ( -39.10) >DroSim_CAF1 15341 109 - 1 GG-GGUAACUCUUUAGCGGUGACCUUUUCAAAGAGCUUCAGAAAAGUUUGAGUUCUUAAAGGUAUGCCACUUUAAAAUGGUACCC-GAUUCCAAGUUAUGGGUCACCUAGU .(-(((.((((..((((((((((((((...(((((((.((((....))))))))))))))))).)))).........(((.....-....))).)))).)))).))))... ( -31.20) >consensus GG_GGUGACUCUUUAGCGGUGACCUUUUCAAAGAGCUACAGAAAAGUUUGAGUUCUUAAAGGUAUGCCACUUUAAAAUGGUACCC_GAUUCCAAGUUAUGGGUCACCUAGU ....((((((....((.((((((((((...(((((((.((((....))))))))))))))))).)))).))......(((..........)))))))))............ (-18.65 = -19.77 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:58 2006