Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,993,554 – 1,993,670 |
Length | 116 |
Max. P | 0.950193 |
Location | 1,993,554 – 1,993,670 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 92.53 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -28.83 |
Energy contribution | -29.17 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.09 |
Mean z-score | -2.69 |
Structure conservation index | 0.90 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1993554 116 + 22224390 UUCCAGUUAAAACCAAGUGCCCAGUAUACCCUUUUACUUUGUGGGUACCGGGUAUGUACAUACAUAAAUACGCGCGAAGCCAGUUUUAUGUGUGUACACUCGAAUGUCUACCGCCC (((.(((....(((..((((((((((........)))....)))))))..)))..(((((((((((((...((.....))....)))))))))))))))).)))............ ( -34.70) >DroSec_CAF1 25590 116 + 1 UUUCAGUUAAAACCACGUGCCCAGUAUACCCUUUUUCUCUGUGGGUACCGGGUAUGUACAUACAUAAAUACGCGCGAAGCCAGUUUUAUGUGUGUACACUCGAAUGUCUACCACCC .((((((.........((((((.((..((((...........)))))).))))))(((((((((((((...((.....))....)))))))))))))))).)))............ ( -33.40) >DroEre_CAF1 15339 116 + 1 UUCCAGUUUAAGCCACGAACCCAGUAUACCCAUUUACUUUGUGGGUACCAGGUAUGUACAUACAUAAAUACCCACGAAGCCAGUUUUAUGUGUGUACACUCGAAUGUCUACCACCC ...............((((((..((..((((((.......))))))))..))).((((((((((((((................)))))))))))))).))).............. ( -27.89) >consensus UUCCAGUUAAAACCACGUGCCCAGUAUACCCUUUUACUUUGUGGGUACCGGGUAUGUACAUACAUAAAUACGCGCGAAGCCAGUUUUAUGUGUGUACACUCGAAUGUCUACCACCC (((.(((....(((..((((((((((........)))....)))))))..)))..(((((((((((((...((.....))....)))))))))))))))).)))............ (-28.83 = -29.17 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:22 2006