Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,242,651 – 18,242,762 |
Length | 111 |
Max. P | 0.632794 |
Location | 18,242,651 – 18,242,762 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -38.22 |
Consensus MFE | -27.51 |
Energy contribution | -29.32 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.15 |
Mean z-score | -1.61 |
Structure conservation index | 0.72 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18242651 111 + 22224390 UUUGGCUGCCCUGGCCGUGUUUGGGUAUUUCGCCCGAUUUUAGUGACAGUCGGCGAGAGUCGUUAACGAUUGCCACUUGGGCAAUGUGAUUUGGAUAUCUAAAGGUGUCUG ......(((((((((..((((......(((((((.((((........)))))))))))......))))...))))...))))).........(((((((....))))))). ( -35.10) >DroSec_CAF1 16793 111 + 1 CUUGGUUGCCCUGGCCCUGUUUGGGUAUUUCGCCCGAUUUCAGUGACAGUCGGCGAGAGUCGUUAACGAUUGCCACUUGGGUGGUGUGAUUUGAAUAUCUAAAGGUGUCUG ............((((((..(((((((((((((((.(((..((((.((((((((....)))(....)))))).))))..))))).))))....)))))))))))).))).. ( -33.00) >DroEre_CAF1 15981 108 + 1 UAUGGCCGCCCUGGC--UGUU-GAGGAUUUCGCCCGAUUUCAGUGGAAGUUGGCGACUCGCGUUAACGAUUGCCACUUGGGCGGUGUGAUUUGGAUAUCUAAAGGUGUCUG ....(((((((((((--((((-((.(...(((((.((((((....)))))))))))....).))))))...))))...))))))).......(((((((....))))))). ( -43.50) >DroYak_CAF1 16903 105 + 1 UAUGGCUGCCCUGGC--UGUU-UGGGAUUUCGCCCGAUUUCAGUGG---CUGUCGACUCGCGUUAACGAUUGCCACUUGGGCGGUGUGGUUUGGAUAGCUAAAGGUGUCUG ...(((.(((.((((--((((-..((...(((((((.....(((((---(.((((...........)))).))))))))))))).....))..))))))))..)))))).. ( -41.30) >consensus UAUGGCUGCCCUGGC__UGUU_GGGGAUUUCGCCCGAUUUCAGUGACAGUCGGCGACACGCGUUAACGAUUGCCACUUGGGCGGUGUGAUUUGGAUAUCUAAAGGUGUCUG ....(((((((((((..((((......(((((((.((((........)))))))))))......))))...))))...))))))).......(((((((....))))))). (-27.51 = -29.32 + 1.81)
Location | 18,242,651 – 18,242,762 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -17.44 |
Energy contribution | -18.45 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.11 |
Mean z-score | -1.88 |
Structure conservation index | 0.63 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18242651 111 - 22224390 CAGACACCUUUAGAUAUCCAAAUCACAUUGCCCAAGUGGCAAUCGUUAACGACUCUCGCCGACUGUCACUAAAAUCGGGCGAAAUACCCAAACACGGCCAGGGCAGCCAAA ............(((......)))...((((((.(((((((.(((....((.....)).))).)))))))......((.((.............)).)).))))))..... ( -26.62) >DroSec_CAF1 16793 111 - 1 CAGACACCUUUAGAUAUUCAAAUCACACCACCCAAGUGGCAAUCGUUAACGACUCUCGCCGACUGUCACUGAAAUCGGGCGAAAUACCCAAACAGGGCCAGGGCAACCAAG ............(((......)))......(((.(((((((.(((....((.....)).))).)))))))......(((.......))).....)))...((....))... ( -25.30) >DroEre_CAF1 15981 108 - 1 CAGACACCUUUAGAUAUCCAAAUCACACCGCCCAAGUGGCAAUCGUUAACGCGAGUCGCCAACUUCCACUGAAAUCGGGCGAAAUCCUC-AACA--GCCAGGGCGGCCAUA ............(((......)))...((((((...((((..((((....)))).(((((...(((....)))....))))).......-....--))))))))))..... ( -30.10) >DroYak_CAF1 16903 105 - 1 CAGACACCUUUAGCUAUCCAAACCACACCGCCCAAGUGGCAAUCGUUAACGCGAGUCGACAG---CCACUGAAAUCGGGCGAAAUCCCA-AACA--GCCAGGGCAGCCAUA ............(((.............(((((.((((((....((..((....))..)).)---)))))(....))))))........-....--((....))))).... ( -28.70) >consensus CAGACACCUUUAGAUAUCCAAAUCACACCGCCCAAGUGGCAAUCGUUAACGACACUCGCCAACUGCCACUGAAAUCGGGCGAAAUACCC_AACA__GCCAGGGCAGCCAAA ...........................((((((...((((....(((........(((((.................)))))........)))...))))))))))..... (-17.44 = -18.45 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:47 2006