Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,202,236 – 18,202,351 |
Length | 115 |
Max. P | 0.679056 |
Location | 18,202,236 – 18,202,338 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 75.95 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -20.10 |
Energy contribution | -19.94 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.25 |
Mean z-score | -1.56 |
Structure conservation index | 0.65 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18202236 102 + 22224390 AGCUAGUU-----------ACUCCGAUUGCUCACGGUGUACCUGGUAGUACGGGAGCUGGUUAGGUGGGGCUCUAUCAAAAUUGUAGAGUUCCAUGAUAAUCCAGGCGUAAUG .....(((-----------(((((((((((.((.((....))))))))).))))..(((((((.((((((((((((.......))))))))))))..))).))))..))))). ( -36.40) >DroSec_CAF1 62500 85 + 1 ----------------------------GCUCACGGUGUAACUGGUAGUGCGGUAGCUGGUUAGAUGGGGCUCUAUCAAAAUUUUAGAGUUCCAUGAUAAUCCCGGCGUAAUG ----------------------------(((..(((.....)))..)))......((((((((.(((((((((((.........)))))))))))..)))..)))))...... ( -26.10) >DroSim_CAF1 61669 102 + 1 AGUUAGUU-----------ACUCCGAUUGCUCACGGUGUAACUGGUGGUGCGGUAGCUGGUUAGAUGGGGCUCUAUCAAAAUUGUAGAGUUCCAUGAUAAUCCCGACGUAAUG ..((((((-----------((.(((........))).))))))))..((.(((.....(((((.((((((((((((.......))))))))))))..))))))))))...... ( -33.40) >DroEre_CAF1 56443 113 + 1 AGGUAGUACCGCAUUCAUGGCUCCGAUGGUUCACGGUGUACUUAGAAGUAGGGGACCUGGUUAGAUGGGACCCUAUCAAAAUUGUAGGAUUCUAUGAUAAGCCCGGCGUAAUG .((.....)).....(((.((.(((..((((((..(.((.((((.((((((((..((.........))..)))))).....)).)))))).)..)))...)))))).)).))) ( -27.60) >DroYak_CAF1 56520 94 + 1 AGG-------------------CCGAUUGUUCACUGUGUACCUUAUAGUGUGGGAGCUGCUUAGGUGGGGCCCUAUCAAAAUUGUAGGGUUCUAUGAUAAUCCCGGCGUAAUG ..(-------------------((.......(((((((.....))))))).((((....(....((((((((((((.......)))))))))))))....)))))))...... ( -32.10) >consensus AGGUAGU_____________CUCCGAUUGCUCACGGUGUACCUGGUAGUGCGGGAGCUGGUUAGAUGGGGCUCUAUCAAAAUUGUAGAGUUCCAUGAUAAUCCCGGCGUAAUG ........................................((((......)))).((((((((.((((((((((((.......))))))))))))..)))..)))))...... (-20.10 = -19.94 + -0.16)
Location | 18,202,261 – 18,202,351 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -20.30 |
Energy contribution | -20.14 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.22 |
Mean z-score | -1.69 |
Structure conservation index | 0.72 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18202261 90 + 22224390 UGUACCUGGUAGUACGGGAGCUGGUUAGGUGGGGCUCUAUCAAAAUUGUAGAGUUCCAUGAUAAUCCAGGCGUAAUGCCAA--------CCAUUCUCC .((((......))))(((((.(((((..((((((((((((.......)))))))))))).........(((.....)))))--------)))))))). ( -32.10) >DroSec_CAF1 62508 90 + 1 UGUAACUGGUAGUGCGGUAGCUGGUUAGAUGGGGCUCUAUCAAAAUUUUAGAGUUCCAUGAUAAUCCCGGCGUAAUGCCCC--------CCAUUCUUC ......(((..(.(((...((((((((.(((((((((((.........)))))))))))..)))..)))))....))))..--------)))...... ( -29.10) >DroSim_CAF1 61694 90 + 1 UGUAACUGGUGGUGCGGUAGCUGGUUAGAUGGGGCUCUAUCAAAAUUGUAGAGUUCCAUGAUAAUCCCGACGUAAUGCCCC--------CCAUUCUCC ......(((.((.(((...((.(((((.((((((((((((.......))))))))))))..))).)).).)....))).))--------)))...... ( -26.70) >DroEre_CAF1 56479 90 + 1 UGUACUUAGAAGUAGGGGACCUGGUUAGAUGGGACCCUAUCAAAAUUGUAGGAUUCUAUGAUAAGCCCGGCGUAAUGCCCC--------CAAUUCUCC .......((((...((((.((.((((.(((((....)))))...((..(((....)))..)).)))).)).......))))--------...)))).. ( -23.40) >DroYak_CAF1 56537 98 + 1 UGUACCUUAUAGUGUGGGAGCUGCUUAGGUGGGGCCCUAUCAAAAUUGUAGGGUUCUAUGAUAAUCCCGGCGUAAUGCUCCUCCCCGCCACAUUCUCC ...........(((.(((((..(((((.((.(((((((((.......))))))............))).)).))).))..)))))))).......... ( -30.60) >consensus UGUACCUGGUAGUGCGGGAGCUGGUUAGAUGGGGCUCUAUCAAAAUUGUAGAGUUCCAUGAUAAUCCCGGCGUAAUGCCCC________CCAUUCUCC .(((((((......)))).((((((((.((((((((((((.......))))))))))))..)))..)))))....))).................... (-20.30 = -20.14 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:30 2006