Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,190,337 – 18,190,433 |
Length | 96 |
Max. P | 0.837337 |
Location | 18,190,337 – 18,190,433 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 91.88 |
Mean single sequence MFE | -30.45 |
Consensus MFE | -24.50 |
Energy contribution | -24.75 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.80 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18190337 96 + 22224390 UGUACGUGUGUAUCUGCCAGCAGCGGCAGACGCAGCAGCAGCAACAGCGUCCGGCCA-GCUGCACUGCAAGAAAUCAGUGAAAGCUAUGUGCAAAAA (((((((.....(((((..((((((((.(((((.((....))....)))))..))).-)))))...)).)))....(((....)))))))))).... ( -34.60) >DroSec_CAF1 52746 96 + 1 UGUACGUGUGUAUCUGCCAGCAGCGGCAGACGCAGCAGCAGCAACAGCGUCCGGCCA-GCUGCACUGCAAGAAAUCAGUGAAAGCAGUCUUGAAAAA .((((....))))((((..((((((((.(((((.((....))....)))))..))).-)))))((((........))))....)))).......... ( -29.70) >DroSim_CAF1 51182 96 + 1 UGUACGUGUGUAUCUGCCAGCAGCGGCAGACGCAGCAGCAGCAACAGCGUCCGGCCA-GCUGCACUGCAAGAAAUCAGUGGAAGCAGUCUUAAAAAA .((((....))))((((..((((((((.(((((.((....))....)))))..))).-)))))((((........))))....)))).......... ( -29.70) >DroYak_CAF1 46589 94 + 1 UGUACGUGUGUAUCUGCCAGCAGCGGCAGACGCAGCAGCAGCAACAGCGUCCGGCCACGGUGCACUGCAAAAAACCCGUGAAUG---UUUUGAAAAA ..((((.(((..((((((......))))))..).((((..((....))(((((....))).)).)))).....)).))))....---.......... ( -27.80) >consensus UGUACGUGUGUAUCUGCCAGCAGCGGCAGACGCAGCAGCAGCAACAGCGUCCGGCCA_GCUGCACUGCAAGAAAUCAGUGAAAGCAGUCUUGAAAAA ..(((...((..((((((......))))))..))((((((((....((.....))...)))))..))).........)))................. (-24.50 = -24.75 + 0.25)
Location | 18,190,337 – 18,190,433 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 91.88 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -27.77 |
Energy contribution | -28.03 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.83 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18190337 96 - 22224390 UUUUUGCACAUAGCUUUCACUGAUUUCUUGCAGUGCAGC-UGGCCGGACGCUGUUGCUGCUGCUGCGUCUGCCGCUGCUGGCAGAUACACACGUACA ..(((((.((........((((........))))(((((-.(((.((((((....((....)).)))))))))))))))))))))............ ( -33.00) >DroSec_CAF1 52746 96 - 1 UUUUUCAAGACUGCUUUCACUGAUUUCUUGCAGUGCAGC-UGGCCGGACGCUGUUGCUGCUGCUGCGUCUGCCGCUGCUGGCAGAUACACACGUACA ..........(((((...((((........))))(((((-.(((.((((((....((....)).)))))))))))))).)))))............. ( -34.60) >DroSim_CAF1 51182 96 - 1 UUUUUUAAGACUGCUUCCACUGAUUUCUUGCAGUGCAGC-UGGCCGGACGCUGUUGCUGCUGCUGCGUCUGCCGCUGCUGGCAGAUACACACGUACA ..........(((((...((((........))))(((((-.(((.((((((....((....)).)))))))))))))).)))))............. ( -34.60) >DroYak_CAF1 46589 94 - 1 UUUUUCAAAA---CAUUCACGGGUUUUUUGCAGUGCACCGUGGCCGGACGCUGUUGCUGCUGCUGCGUCUGCCGCUGCUGGCAGAUACACACGUACA ..........---.....(((.((..(((((...(((..(((((.((((((....((....)).))))))))))))))..))))).))...)))... ( -31.80) >consensus UUUUUCAAGACUGCUUUCACUGAUUUCUUGCAGUGCAGC_UGGCCGGACGCUGUUGCUGCUGCUGCGUCUGCCGCUGCUGGCAGAUACACACGUACA .............................((((((((((..(((.....)))...))))).)))))((((((((....))))))))........... (-27.77 = -28.03 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:28 2006