Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,173,735 – 18,173,834 |
Length | 99 |
Max. P | 0.986168 |
Location | 18,173,735 – 18,173,834 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 93.69 |
Mean single sequence MFE | -22.24 |
Consensus MFE | -20.20 |
Energy contribution | -19.64 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.71 |
Structure conservation index | 0.91 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18173735 99 - 22224390 AUAAUGUCCGACAAUCGUUUCGCAUUUUUGUUUUAAUUACGAAAUGCAGGCGAACAAACA------UUCGCAAAGUAUUUCUCGUUGGCAUAACUUUUGUCGCAA ........((((((..(((..((......((.......))(((((((..(((((......------)))))...)))))))......))..)))..))))))... ( -23.50) >DroSec_CAF1 36605 99 - 1 AUAAUGUCCGACAAUCGUUUCGCAUUUUUGUUUUAAUUACGAAAUGCAGGCGAACAAACA------UUCGCAAAGUAUUUCUCGUUGGCAUAACUUUUGUCGCAA ........((((((..(((..((......((.......))(((((((..(((((......------)))))...)))))))......))..)))..))))))... ( -23.50) >DroSim_CAF1 35488 99 - 1 AUAAUGUCCGACAAUCGUUUCGCAUUUUUGUUUUAAUUACGAAAUGCAGGCGAACAAACA------UUCGCAAAGUAUUUCUCGUUGGCAUAACUUUUGUCGCAA ........((((((..(((..((......((.......))(((((((..(((((......------)))))...)))))))......))..)))..))))))... ( -23.50) >DroEre_CAF1 30703 99 - 1 AUAAUGUCCGACAAUAGUUUCACAUUUUUGUUUUAAUUACGAAAUGCAGGCGAACAAACA------UGCGCAAAGUAUUUCUCGCUGGUAUAACUUUUGUCGCAA ........((((((.((((.......(((((.......)))))((((.(((((......(------(((.....))))...))))).)))))))).))))))... ( -21.00) >DroYak_CAF1 33299 105 - 1 AUAAUGUCCGACAAUCGUUUCACAUUUUUGUUUUAAUUACGAAAUGCAGGCGAGCAAACACCAGCACUCGCAAAGUAUUUUUCGUUGCUAUAACUUUUGUCGCAA ........((((((..(((..(((....))).......(((((((((..(((((............)))))...))))..)))))......)))..))))))... ( -19.70) >consensus AUAAUGUCCGACAAUCGUUUCGCAUUUUUGUUUUAAUUACGAAAUGCAGGCGAACAAACA______UUCGCAAAGUAUUUCUCGUUGGCAUAACUUUUGUCGCAA ........((((((..(((..((......((.......))(((((((..(((((............)))))...)))))))......))..)))..))))))... (-20.20 = -19.64 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:22 2006