Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,130,396 – 18,130,540 |
Length | 144 |
Max. P | 0.889041 |
Location | 18,130,396 – 18,130,500 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.85 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -22.95 |
Energy contribution | -22.73 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -1.37 |
Structure conservation index | 0.85 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18130396 104 - 22224390 GCUGCGCCGAACGGACCUCCUUCUCCGCCGGACUUGGACUCCGUUCCUAAAUGGAGCGACAACACACACACGGCAAUA--GACUCUUAGCCGAGACAAAA--------------AGAAAA .....((((...(((..(((...(((...)))...))).)))(((((.....))))).............))))....--..(((......)))......--------------...... ( -24.80) >DroSec_CAF1 12697 101 - 1 GCUGCGCCGAACGGACCUCCUCCUCCGCCGGACUUGGACUCCGUUCCUAAAUGGAGCGACAACACACACACGGCAAUAGAGACUCUCAGCCGAGACAAA-------------------AA (((..((((...(((((...(((......)))...))..)))(((((.....))))).............))))....(((...)))))).........-------------------.. ( -25.60) >DroEre_CAF1 12512 116 - 1 GCUGCGCCGAGCGGACCUCCUCCUCCGCUGCACUUGGACUCCGUUCCUAAAUGGAGCGACACCAC--ACACGGCAAUA--GACUCUCAGCCGAGACAAAAAACAAAAAAAACAAAAAAAA .....((((((((((........)))))).....(((....((((((.....))))))...))).--...))))....--...((((....))))......................... ( -30.30) >consensus GCUGCGCCGAACGGACCUCCUCCUCCGCCGGACUUGGACUCCGUUCCUAAAUGGAGCGACAACACACACACGGCAAUA__GACUCUCAGCCGAGACAAAA______________A_AAAA .....((((..((((........))))..............((((((.....))))))............)))).........((((....))))......................... (-22.95 = -22.73 + -0.22)
Location | 18,130,422 – 18,130,540 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.97 |
Mean single sequence MFE | -31.77 |
Consensus MFE | -28.10 |
Energy contribution | -28.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.53 |
Structure conservation index | 0.88 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.889041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18130422 118 - 22224390 CACAUUAGCAGCGCAAUGCAACAAAUAAUUUCCAUAAACUGCUGCGCCGAACGGACCUCCUUCUCCGCCGGACUUGGACUCCGUUCCUAAAUGGAGCGACAACACACACACGGCAAUA-- .......((((((..(((.((........)).)))....))))))((((...(((..(((...(((...)))...))).)))(((((.....))))).............))))....-- ( -30.20) >DroSec_CAF1 12718 120 - 1 CACAUUAGCAGCGCAAUGCAACAAAUAAUUUCCAUAAACUGCUGCGCCGAACGGACCUCCUCCUCCGCCGGACUUGGACUCCGUUCCUAAAUGGAGCGACAACACACACACGGCAAUAGA .......((((((..(((.((........)).)))....))))))((((...(((((...(((......)))...))..)))(((((.....))))).............))))...... ( -30.20) >DroEre_CAF1 12552 116 - 1 CACAUUAGCAGCGCAAUGCAACAAAUAAUUUCCAUAAACUGCUGCGCCGAGCGGACCUCCUCCUCCGCUGCACUUGGACUCCGUUCCUAAAUGGAGCGACACCAC--ACACGGCAAUA-- .......((((((..(((.((........)).)))....))))))((((((((((........)))))).....(((....((((((.....))))))...))).--...))))....-- ( -34.90) >consensus CACAUUAGCAGCGCAAUGCAACAAAUAAUUUCCAUAAACUGCUGCGCCGAACGGACCUCCUCCUCCGCCGGACUUGGACUCCGUUCCUAAAUGGAGCGACAACACACACACGGCAAUA__ .......((((((..(((.((........)).)))....))))))((((..((((........))))..............((((((.....))))))............))))...... (-28.10 = -28.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:11 2006