Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,123,948 – 18,124,119 |
Length | 171 |
Max. P | 0.987845 |
Location | 18,123,948 – 18,124,045 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 85.55 |
Mean single sequence MFE | -31.55 |
Consensus MFE | -26.22 |
Energy contribution | -26.04 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.67 |
Structure conservation index | 0.83 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.987845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18123948 97 + 22224390 GGAUCGACGGCGAUCGGUGAUCGAAGAUCGAAGAUCGAAGAUCGGAGAUGGCAGAUCGGAGAUCUUCGGAGUUCGAGAUCCGUGCUACACAUUAGCA (((((..(..(((((...)))))..).(((((..(((((((((...(((.....)))...)))))))))..)))))))))).(((((.....))))) ( -36.70) >DroSec_CAF1 6503 76 + 1 GGAUCGGCGGCGAUCGGUGAUCGAAGAUCG---------------------CAGAUCGGAGAUCUUCGGAGUUCGAGAUCCGUGCUACACAUUAGCA (((((.....(((((.((((((...)))))---------------------).)))))(((.((....)).)))..))))).(((((.....))))) ( -29.50) >DroSim_CAF1 7160 76 + 1 GGAUCGGCGGCGAUCGGUGAUCGAAGAUCG---------------------CAGAUCGGAGAUCUUCGGAGUUCGAGAUCCGUGCUACACAUUAGCA (((((.....(((((.((((((...)))))---------------------).)))))(((.((....)).)))..))))).(((((.....))))) ( -29.50) >DroEre_CAF1 6326 76 + 1 GGAUCGGCGGCGAUCGGUGAUCGCAGAUCG---------------------GAGAUCGGAGAUCUUCGGAGCUCGAGAUCCGUGCUACACAUUAGCA ((((((((.((((((...))))))...(((---------------------((((((...))))))))).)))...))))).(((((.....))))) ( -30.50) >consensus GGAUCGGCGGCGAUCGGUGAUCGAAGAUCG_____________________CAGAUCGGAGAUCUUCGGAGUUCGAGAUCCGUGCUACACAUUAGCA (((((..((((..((((.((((...((((........................))))...)))).)))).)).)).))))).(((((.....))))) (-26.22 = -26.04 + -0.19)
Location | 18,123,948 – 18,124,045 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 85.55 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -18.33 |
Energy contribution | -18.58 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.78 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18123948 97 - 22224390 UGCUAAUGUGUAGCACGGAUCUCGAACUCCGAAGAUCUCCGAUCUGCCAUCUCCGAUCUUCGAUCUUCGAUCUUCGAUCACCGAUCGCCGUCGAUCC (((((.....))))).((...(((((...((((((((...((((..........))))...))))))))...)))))...))(((((....))))). ( -28.40) >DroSec_CAF1 6503 76 - 1 UGCUAAUGUGUAGCACGGAUCUCGAACUCCGAAGAUCUCCGAUCUG---------------------CGAUCUUCGAUCACCGAUCGCCGCCGAUCC (((((.....))))).((((((((.....)).))))))..((((.(---------------------((.....(((((...))))).))).)))). ( -21.50) >DroSim_CAF1 7160 76 - 1 UGCUAAUGUGUAGCACGGAUCUCGAACUCCGAAGAUCUCCGAUCUG---------------------CGAUCUUCGAUCACCGAUCGCCGCCGAUCC (((((.....))))).((((((((.....)).))))))..((((.(---------------------((.....(((((...))))).))).)))). ( -21.50) >DroEre_CAF1 6326 76 - 1 UGCUAAUGUGUAGCACGGAUCUCGAGCUCCGAAGAUCUCCGAUCUC---------------------CGAUCUGCGAUCACCGAUCGCCGCCGAUCC (((((.....))))).(((..(((.((..((.(((((...))))).---------------------))....((((((...)))))).)))))))) ( -22.20) >consensus UGCUAAUGUGUAGCACGGAUCUCGAACUCCGAAGAUCUCCGAUCUG_____________________CGAUCUUCGAUCACCGAUCGCCGCCGAUCC (((((.....))))).(((((.((......(((((((...............................)))))))((((...))))..))..))))) (-18.33 = -18.58 + 0.25)
Location | 18,124,005 – 18,124,119 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.62 |
Mean single sequence MFE | -32.91 |
Consensus MFE | -27.97 |
Energy contribution | -27.97 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.85 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18124005 114 + 22224390 GGAGAUCUUCGGAGUUCGAGAUCCGUGCUACACAUUAGCAAUUACGCUCAUUACACUUAAUUACAGAAAACUAGGAGUGCAUGAAGAUUUCCACUUGCGGACGGACGACUCC------GA (((((((((((......(((.....(((((.....)))))......)))....(((((................)))))..))))))))))).....((((.(.....))))------). ( -30.69) >DroSec_CAF1 6539 114 + 1 GGAGAUCUUCGGAGUUCGAGAUCCGUGCUACACAUUAGCAAUUACGCUCAUUACACUUAAUUACAGAAAACUAGGAGUGCAUGAAGAUUUCCACUUGCGGACGGACGACUCC------GA (((((((((((......(((.....(((((.....)))))......)))....(((((................)))))..))))))))))).....((((.(.....))))------). ( -30.69) >DroSim_CAF1 7196 114 + 1 GGAGAUCUUCGGAGUUCGAGAUCCGUGCUACACAUUAGCAAUUACGCUCAUUACACUUAAUUACAGAAAACUAGGAGUGCAUGAAGAUUUCCACUUGCGGACGGACGACUCC------GA (((((((((((......(((.....(((((.....)))))......)))....(((((................)))))..))))))))))).....((((.(.....))))------). ( -30.69) >DroEre_CAF1 6362 120 + 1 GGAGAUCUUCGGAGCUCGAGAUCCGUGCUACACAUUAGCAAUUACGCUCAUUACACUUAAUUACAGAAAACUAGGAGUGCAUGAAGAUUUCCACUUGCGGACGGACGACUCCGACUCCGA (((((((((((..(((((((.....(((((.....)))))......)))...............((....))..))))...))))))))))).....((((((((....))))..)))). ( -37.50) >DroYak_CAF1 6904 120 + 1 GGAGAUCUUCGGAGUUCGAGAUCCGUGCUACACAUUAGCAAUUACGCUCAUUACACUUAAUUACAGAAAACUAGGAGUGCAUGAAGAUUUCCACUUGCGGACGGACGACUCCGACUCCGA (((((((((((......(((.....(((((.....)))))......)))....(((((................)))))..))))))))))).....((((((((....))))..)))). ( -34.99) >consensus GGAGAUCUUCGGAGUUCGAGAUCCGUGCUACACAUUAGCAAUUACGCUCAUUACACUUAAUUACAGAAAACUAGGAGUGCAUGAAGAUUUCCACUUGCGGACGGACGACUCC______GA (((((((((((......(((.....(((((.....)))))......)))....(((((................)))))..)))))))))))......(((.(.....))))........ (-27.97 = -27.97 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:06 2006