Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,110,426 – 18,110,516 |
Length | 90 |
Max. P | 0.911898 |
Location | 18,110,426 – 18,110,516 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.52 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -16.14 |
Energy contribution | -16.26 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.08 |
Structure conservation index | 0.80 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18110426 90 + 22224390 CAUUACGACUGGGUAAUAUUGGUAAUAAAUCUAUUAUGUUCGGAAUGGCCGUAAUAUAGAAUAUUUAUGACAUUUGUUACUAGUUCACUA------------------------------ ......((((((.(((((...((.((((((.(.((((((((((.....))).))))))).).)))))).))...))))))))))).....------------------------------ ( -19.40) >DroSec_CAF1 18882 90 + 1 CAUUACGACUGGGUAAUAUUGGUAAUAAAUCUAUUAUGUUCGGGAUGGCCGUAAUAUAGAAUAUUUAUGGCAUUUGUUACUAGCUCACUA------------------------------ ......((((((.(((((...((.((((((.(.((((((((((.....))).))))))).).)))))).))...))))))))).))....------------------------------ ( -19.20) >DroYak_CAF1 18709 120 + 1 UAUUAGGAGUGGGUGAUAUUGGUAAUACAUCUAUUAUGUUCGAACUGGUCAUAAUAUAGAACAUUUAUGGCAUUUAUUGCUGGUUUACUAACAAUAUAGAAUAUAGAACAUUUAUGGCAU .......((((((((.(((.....)))))))))))((((((......(((((((..........)))))))...(((((.(((....))).))))).........))))))......... ( -21.70) >consensus CAUUACGACUGGGUAAUAUUGGUAAUAAAUCUAUUAUGUUCGGAAUGGCCGUAAUAUAGAAUAUUUAUGGCAUUUGUUACUAGUUCACUA______________________________ ...........(((...(((((((((((((((((.((((((.................))))))..)))).)))))))))))))..)))............................... (-16.14 = -16.26 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:41 2006