Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,109,221 – 18,109,336 |
Length | 115 |
Max. P | 0.605577 |
Location | 18,109,221 – 18,109,336 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.11 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -26.12 |
Energy contribution | -26.00 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.47 |
Structure conservation index | 0.85 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18109221 115 + 22224390 ---GCUGGCACCCCAGUCAUCGUCAUCGAUUGUCAUGCAUUAGCCAUUAGGGUUUUACACUAACGCCACCGAAUGGCAGGCACAGACAAUCAUUGGAUUGCGAUAAUAUACA--UACAUA ---(((((....))))).(((((.((((((((((.(((....((((((..(((.(((...))).)))....))))))..)))..)))))))....))).)))))........--...... ( -33.00) >DroSec_CAF1 17677 115 + 1 ---GCUGGCACCCCAGUCGUCGUCAUCGACUGUCAUGCAUUAGCCAUUAGGGUUUUACACUAACGCCACCGAAUGGCAGGCACAGACAAUCAUUGGAUUGCGAUAAUAUACA--UGUGUA ---....(((..(((((.((((....))))((((.(((....((((((..(((.(((...))).)))....))))))..)))..))))...)))))..)))...........--...... ( -30.00) >DroEre_CAF1 15579 109 + 1 ---GCCGGCACUCCAGUCAUCGCCAUAGACCGUCAUGCAUUAGUUAUUAGGGUUUUACACUAACGCCACCAAAUGGCAGGCACAGACAAUCGCAAGAUUGCGAUGAUAUUCU-------- ---...((....)).(((((((((..(((((.(.((((....).))).).))))).........((((.....)))).)))...(.(((((....)))))))))))).....-------- ( -29.60) >DroYak_CAF1 17436 120 + 1 GAUGCCGGCACCCCAGUCAUCGCCAUCGACUGUCAUGCAUUAGCUAUUAGGGUCUUACACUAACGCCAUCGAAUGGCAGGCACAGACAAUCGUAAGAUUGCGAUAAUAUAUACAUAUAUA ..((((.(((...(((((.........)))))...)))....((((((..(((.(((...))).)))....)))))).))))..(.(((((....))))))................... ( -30.40) >consensus ___GCCGGCACCCCAGUCAUCGCCAUCGACUGUCAUGCAUUAGCCAUUAGGGUUUUACACUAACGCCACCGAAUGGCAGGCACAGACAAUCAUAAGAUUGCGAUAAUAUACA__UAUAUA ...(((.(((...(((((.........)))))...)))....((((((..(((.(((...))).)))....)))))).)))...(.(((((....))))))................... (-26.12 = -26.00 + -0.12)
Location | 18,109,221 – 18,109,336 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.11 |
Mean single sequence MFE | -34.34 |
Consensus MFE | -31.81 |
Energy contribution | -31.62 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.16 |
Mean z-score | -1.24 |
Structure conservation index | 0.93 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18109221 115 - 22224390 UAUGUA--UGUAUAUUAUCGCAAUCCAAUGAUUGUCUGUGCCUGCCAUUCGGUGGCGUUAGUGUAAAACCCUAAUGGCUAAUGCAUGACAAUCGAUGACGAUGACUGGGGUGCCAGC--- ......--......((((((..(((....(((((((.((((..((((((.(((.(((....)))...)))..))))))....))))))))))))))..))))))((((....)))).--- ( -35.20) >DroSec_CAF1 17677 115 - 1 UACACA--UGUAUAUUAUCGCAAUCCAAUGAUUGUCUGUGCCUGCCAUUCGGUGGCGUUAGUGUAAAACCCUAAUGGCUAAUGCAUGACAGUCGAUGACGACGACUGGGGUGCCAGC--- (((((.--...........((((((....))))))....(((.(((....))))))....)))))...........(((...((((..((((((.......))))))..)))).)))--- ( -33.10) >DroEre_CAF1 15579 109 - 1 --------AGAAUAUCAUCGCAAUCUUGCGAUUGUCUGUGCCUGCCAUUUGGUGGCGUUAGUGUAAAACCCUAAUAACUAAUGCAUGACGGUCUAUGGCGAUGACUGGAGUGCCGGC--- --------......(((((((.....((.(((((((((((((.(((....))))))((((((..............))))))))).)))))))))..)))))))((((....)))).--- ( -34.14) >DroYak_CAF1 17436 120 - 1 UAUAUAUGUAUAUAUUAUCGCAAUCUUACGAUUGUCUGUGCCUGCCAUUCGAUGGCGUUAGUGUAAGACCCUAAUAGCUAAUGCAUGACAGUCGAUGGCGAUGACUGGGGUGCCGGCAUC .......(((((.((.((((........)))).)).)))))..(((((.((((.((((((((.((......))...))))))))......)))))))))((((.((((....)))))))) ( -34.90) >consensus UAUAUA__UGUAUAUUAUCGCAAUCCAACGAUUGUCUGUGCCUGCCAUUCGGUGGCGUUAGUGUAAAACCCUAAUAGCUAAUGCAUGACAGUCGAUGACGAUGACUGGGGUGCCAGC___ ..............(((((((.(((....(((((((.((((..(((((...)))))((((((.((......))...)))))))))))))))))))).)))))))((((....)))).... (-31.81 = -31.62 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:37 2006