Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,087,053 – 18,087,162 |
Length | 109 |
Max. P | 0.875676 |
Location | 18,087,053 – 18,087,162 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.66 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -11.13 |
Energy contribution | -11.40 |
Covariance contribution | 0.27 |
Combinations/Pair | 1.13 |
Mean z-score | -2.25 |
Structure conservation index | 0.44 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18087053 109 + 22224390 AAAA---AAAACGGGUAGUACGACCAGAUAUUUGAG-GGCUAAAAAUAAAAACCAGUA--UUGGCUGGAAAAUAAUCAAUA--GCCCCUAAUGAACGCGGAAAAUCAUAGCUCGU---CA ....---...((((((...................(-(((((..........(((((.--...)))))...........))--))))...((((..........)))).))))))---.. ( -21.30) >DroSec_CAF1 9435 112 + 1 AAAAAAACAAACGGGUAGUACGACCAGAUAUUUGAG-GGCUAAAAAUAGAAACCAGUC--UUGGCUGGAAAACAAUCAAUA--GCACCUAAUGAACGUGGAAAAUCGUAGCUCGU---CA ..........((((((..((((((((........((-(((((..........(((((.--...)))))...........))--)).)))........)))....)))))))))))---.. ( -26.39) >DroSim_CAF1 9405 115 + 1 AAAAAAACAAACGGGUAGUACGACCAGAUAUUUGAG-GGCUAAAAAUAGAAACCAGUC--UUGGCUGGAAAACAAGCAAUA--GACCCUAAUGAACGUGGAAAAUCAUAACUCGUUUUCA ........((((((((.((....(((........((-(((((..........(((((.--...)))))...........))--).))))........)))......)).))))))))... ( -22.99) >DroEre_CAF1 7082 108 + 1 ----AAGCAAACGGGUAGCCACGCCAGAUAAUCGUG-GGCUAAAAAUAGAAACCAGUC--UUGGCUGGAAAACAAUCAAUG--GCCCCUAAUGAGCAUGGAAAACCGUGGCUCGC---AA ----..((....(((..((((.(((.(.....)...-)))............(((((.--...)))))...........))--)))))....((((((((....)))).))))))---.. ( -33.90) >DroYak_CAF1 8192 100 + 1 ----AAACGAAC-------------AGAUAUUCGAGGGGCUUAAACUAAAAACCAGUCUCUCGGCUGGAAAACAAUCAAUAGAGCUCCUAAUGAACAUGGAAAAUCAUAGCUCGU---CA ----........-------------........((.(((((...........((((((....)))))).............((..(((..........)))...))..))))).)---). ( -21.50) >consensus AAAAAAACAAACGGGUAGUACGACCAGAUAUUUGAG_GGCUAAAAAUAGAAACCAGUC__UUGGCUGGAAAACAAUCAAUA__GCCCCUAAUGAACGUGGAAAAUCAUAGCUCGU___CA .............(((......)))............(((((..........(((((......)))))..................((..........)).......)))))........ (-11.13 = -11.40 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:05 2006