Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,067,638 – 18,067,792 |
Length | 154 |
Max. P | 0.825348 |
Location | 18,067,638 – 18,067,752 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.79 |
Mean single sequence MFE | -33.97 |
Consensus MFE | -30.16 |
Energy contribution | -29.94 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.23 |
Structure conservation index | 0.89 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18067638 114 + 22224390 AUUUGAGUGGGGUUUUCCCCAUUC------CCAGCCCCAUCCACAUUUCAAUGCCUCGCAAUCGAGAAACCACAUUGCGGUACUUUCGGCGUUGCGGGCAAUUUGCUUGCCAACUAAUUG ....((((((((....))))))))------.....................((((.(((((((((((.(((.......)))..)))))..)))))))))).................... ( -33.00) >DroSec_CAF1 5409 114 + 1 AUUUGAGUGGGGUUUUCCCCAUCC------CCAUUCCCAUCCCCAUUUCAAUGCCCCGCAAUCGAGAAACCACAUUGCGGUACUUUCGGCGUUGCGGGCAAUUUGCUUGCCAACUAAUUG ....((((((((..........))------))))))............((((((((((((((.(........)))))))).......)))))))..(((((.....)))))......... ( -33.71) >DroSim_CAF1 8552 120 + 1 AUUUGAGUGGGGUUUUCCCCAUCCCCAGCCCCAUUCCCAUCCCCAUUUCAAUGCCCCGCAAUCGAGAAACCACAUUGCGGUACUUUCGGCGUUGCGGGCAAUUUGCUUGCCAACUAAUUG ....((((((((((............))))))))))............((((((((((((((.(........)))))))).......)))))))..(((((.....)))))......... ( -35.21) >consensus AUUUGAGUGGGGUUUUCCCCAUCC______CCAUUCCCAUCCCCAUUUCAAUGCCCCGCAAUCGAGAAACCACAUUGCGGUACUUUCGGCGUUGCGGGCAAUUUGCUUGCCAACUAAUUG ......((((((....))))))..........................((((((((((((((.(........)))))))).......)))))))..(((((.....)))))......... (-30.16 = -29.94 + -0.22)
Location | 18,067,672 – 18,067,792 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.41 |
Mean single sequence MFE | -40.80 |
Consensus MFE | -36.33 |
Energy contribution | -37.33 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.89 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.723054 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18067672 120 - 22224390 CUCUAGAAUCCCAAUCCCAAACCGAAUGUCGAGACGUGGGCAAUUAGUUGGCAAGCAAAUUGCCCGCAACGCCGAAAGUACCGCAAUGUGGUUUCUCGAUUGCGAGGCAUUGAAAUGUGG ...........((((.((....((...(((((((.((((((((((.(((....))).)))))))))).....(....).(((((...))))).)))))))..)).)).))))........ ( -36.60) >DroSec_CAF1 5443 118 - 1 CUCCAGA--CACAAUCCCAAUCCCAAUGUCGGGACAUGGGCAAUUAGUUGGCAAGCAAAUUGCCCGCAACGCCGAAAGUACCGCAAUGUGGUUUCUCGAUUGCGGGGCAUUGAAAUGGGG (((((..--..(((((((..((((......))))...((((((((.(((....))).))))))))((((((..((((.(((......))).)))).)).)))).))).))))...))))) ( -42.80) >DroSim_CAF1 8592 118 - 1 CUCCAGA--CACAAUCCCAAUCCCAAUGUCGAGACGUGGGCAAUUAGUUGGCAAGCAAAUUGCCCGCAACGCCGAAAGUACCGCAAUGUGGUUUCUCGAUUGCGGGGCAUUGAAAUGGGG (((((((--.....)).(((((((...(((((((.((((((((((.(((....))).)))))))))).....(....).(((((...))))).)))))))....))).))))...))))) ( -43.00) >consensus CUCCAGA__CACAAUCCCAAUCCCAAUGUCGAGACGUGGGCAAUUAGUUGGCAAGCAAAUUGCCCGCAACGCCGAAAGUACCGCAAUGUGGUUUCUCGAUUGCGGGGCAUUGAAAUGGGG ...............((((....(((((((.....((((((((((.(((....))).))))))))))..((((((....(((((...)))))...)))...))).)))))))...)))). (-36.33 = -37.33 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:28 2006