Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,065,530 – 18,065,810 |
Length | 280 |
Max. P | 0.815035 |
Location | 18,065,530 – 18,065,650 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -38.47 |
Consensus MFE | -37.87 |
Energy contribution | -38.20 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.98 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18065530 120 - 22224390 AGCUGCUGCUGUCGAUUUUGGAGGCCCAGGCACUUGGCUCUGCCAGUUUCCACUGUUUUCGCCACUCGGGUUUUCCCGCCAUUUUUGUUUUCCUUCUCCCUUGGCAGCGAGGCAAACAAA .(((..(((((((((....(((((...(((((..((((.....((((....)))).....))))..((((....)))).......))))).)))))....))))))))).)))....... ( -37.60) >DroSec_CAF1 3366 120 - 1 AGCUGCUGCUGUCGAUUUUGGAGGGCCAGGCACUUGGCUCUGCCAGUUUCCACUGUUUUCGCCACUCGGGUUUUCCCGCCAUUUUUGUUUUCCUUCUCCCUUGGCAGCGAGGCAAACAAA .(((..(((((((((..((((((((((((....)))))))).))))..))................((((....))))........................))))))).)))....... ( -38.90) >DroSim_CAF1 6503 120 - 1 AGCUGCUGCUGUCGAUUUUGGAGGGCCAGGCACUUGGCUCUGCCAGUUUCCACUGUUUUCGCCACUCGGGUUUUCCCGCCAUUUUUGUUUUCCUUCUCCCUUGGCAGCGAGGCAAACAAA .(((..(((((((((..((((((((((((....)))))))).))))..))................((((....))))........................))))))).)))....... ( -38.90) >consensus AGCUGCUGCUGUCGAUUUUGGAGGGCCAGGCACUUGGCUCUGCCAGUUUCCACUGUUUUCGCCACUCGGGUUUUCCCGCCAUUUUUGUUUUCCUUCUCCCUUGGCAGCGAGGCAAACAAA .(((..(((((((((....((((((..(((((..((((.....((((....)))).....))))..((((....)))).......)))))))))))....))))))))).)))....... (-37.87 = -38.20 + 0.33)
Location | 18,065,570 – 18,065,690 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -41.80 |
Consensus MFE | -39.67 |
Energy contribution | -41.17 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.95 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18065570 120 + 22224390 GGCGGGAAAACCCGAGUGGCGAAAACAGUGGAAACUGGCAGAGCCAAGUGCCUGGGCCUCCAAAAUCGACAGCAGCAGCUGACUCGUGGAACAGCAGGCACAACUUCAUUACCGUUGAGC ((((((....))))..((((.....((((....)))).....)))).(((((((....((((....(((((((....))))..)))))))....)))))))..........))....... ( -42.20) >DroSec_CAF1 3406 120 + 1 GGCGGGAAAACCCGAGUGGCGAAAACAGUGGAAACUGGCAGAGCCAAGUGCCUGGCCCUCCAAAAUCGACAGCAGCAGCUGACUCGGGGAACAGCAGGCACAACUUCAUUACCGUUGAGC ((((((....))))..((((.....((((....)))).....)))).(((((((....(((....((((((((....))))..)))))))....)))))))..........))....... ( -41.60) >DroSim_CAF1 6543 120 + 1 GGCGGGAAAACCCGAGUGGCGAAAACAGUGGAAACUGGCAGAGCCAAGUGCCUGGCCCUCCAAAAUCGACAGCAGCAGCUGACUCGGGGAACAGCAGGCACAACUUCAUUACCGUUGAGC ((((((....))))..((((.....((((....)))).....)))).(((((((....(((....((((((((....))))..)))))))....)))))))..........))....... ( -41.60) >consensus GGCGGGAAAACCCGAGUGGCGAAAACAGUGGAAACUGGCAGAGCCAAGUGCCUGGCCCUCCAAAAUCGACAGCAGCAGCUGACUCGGGGAACAGCAGGCACAACUUCAUUACCGUUGAGC ((((((....))))..((((.....((((....)))).....)))).(((((((....(((.....(((((((....))))..))).)))....)))))))..........))....... (-39.67 = -41.17 + 1.50)
Location | 18,065,690 – 18,065,810 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.61 |
Mean single sequence MFE | -40.43 |
Consensus MFE | -39.44 |
Energy contribution | -39.67 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.55 |
Structure conservation index | 0.98 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.628431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18065690 120 + 22224390 UGGCGGCGCGUGGGCGUGCCGAGAUUUAUUCAAUUUAAUUUGGCAUCGGCGUCAAGUCGGGCGUUGGUGUCGAGGCAUGUGAUUAAAAAUUGUUUACCAAGUUCAUUGACAUCGACCCGG ((((((((((....)))))))...((((.(((......(((((((((((((((......))))))))))))))).....))).)))).........)))..................... ( -39.10) >DroSec_CAF1 3526 120 + 1 UGGCGGCGCGUGGGCGUGCCGAGAUUUAUUCAAUUUAAUUUGGCAUCGGCGUCAAGUAGGGCGUUGGUGUCGAGGCAUGUGAUUAAAAAUUGUUUACCAAGUUCAUUGACAUCGAACCGG ((((((((((....)))))))...((((.(((......(((((((((((((((......))))))))))))))).....))).)))).........))).((((.........))))... ( -40.70) >DroSim_CAF1 6663 120 + 1 UGGCGGCGCGUGGGCGUGCCGAGAUUUAUUCAAUUUAAUUUGGCAUCGGCGUCAAGUCGGGCGUUGGUGUCGAGGCAUGUGAUUAAAAAUUGUUUACCAAGUUCAUUGACAUCGAGCCGG ...((((.((((.(((((((..((.....))........((((((((((((((......))))))))))))))))))))).................(((.....))).)).)).)))). ( -41.50) >consensus UGGCGGCGCGUGGGCGUGCCGAGAUUUAUUCAAUUUAAUUUGGCAUCGGCGUCAAGUCGGGCGUUGGUGUCGAGGCAUGUGAUUAAAAAUUGUUUACCAAGUUCAUUGACAUCGAACCGG ((((((((((....)))))))...((((.(((......(((((((((((((((......))))))))))))))).....))).)))).........))).((((.........))))... (-39.44 = -39.67 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:20 2006