Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,984,511 – 1,984,631 |
Length | 120 |
Max. P | 0.667748 |
Location | 1,984,511 – 1,984,631 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -39.84 |
Consensus MFE | -32.00 |
Energy contribution | -32.12 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.74 |
Structure conservation index | 0.80 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1984511 120 + 22224390 AAACAGUUACAGGCGGAGCAGUGGAAAGGUGACCCACUGUAGCAUUCAUCAUCGAGGUCAUGGCCAAAAUUGGAUUUGUGGUGGGUGUAAGUGAUGGCGGUCCCUGUGGCUGUUGUUGAG .((((((((((((.((.(((((((...(....)))))))).((((((((((.((((..((..........))..))))))))))))))............))))))))))))))...... ( -43.90) >DroSec_CAF1 17958 120 + 1 AAACAGUUACAGGCGGAGCAGUAGAAAGGUGACCCACUGUAGCGUUCAUCAUCGAGGUCAUGGCCAAAAUUGGAUUUGUGGUGGGUGUAAGUAAUGGCGGUCCCUGUGGCUGUUGUUGAG .((((((((((((.((.((............((((((..(((.(((((.......(((....))).....))))))))..))))))..........))..))))))))))))))...... ( -39.75) >DroEre_CAF1 7641 120 + 1 AAACAGUUACGGGCGGAGCAGUAGAUAUGUGACCCACAGUGGCAUUCAUCAUCGAGGUCAUGGCCAGAAUGGGAUUUGUGGUGGGUGUAAGUGAAGGUGGUCCCUGUGGCUGCUGUUGAG ...((((((((((....(((.......)))(((((.((.(.(((((((((((.((..((((.......))))..)).))))))))))).).))...).))))))))))))))........ ( -37.40) >DroYak_CAF1 18382 120 + 1 AAACAGUUACGGGUGGAGCAGUAGAUAGGUGACCCACAGUGGCAUUCAUCAUCGAGGUCAUGGCCAGAAUGGGAUUUGUGGUGGGUGUAAGUGAUGGUGGUCCCUGUUGUUGCUGUUGAG ................(((((((((((((.(((((.((.(.(((((((((((.((..((((.......))))..)).))))))))))).).))...).))))))))))..)))))))... ( -38.30) >consensus AAACAGUUACAGGCGGAGCAGUAGAAAGGUGACCCACAGUAGCAUUCAUCAUCGAGGUCAUGGCCAAAAUGGGAUUUGUGGUGGGUGUAAGUGAUGGCGGUCCCUGUGGCUGCUGUUGAG .((((((((((((.((.((............((((((..(((.(((((.......(((....))).....))))))))..))))))..........))..))))))))))))))...... (-32.00 = -32.12 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:04 2006