Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,060,772 – 18,061,012 |
Length | 240 |
Max. P | 0.815065 |
Location | 18,060,772 – 18,060,892 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -21.92 |
Energy contribution | -22.37 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -1.42 |
Structure conservation index | 0.72 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18060772 120 - 22224390 GCAAGAGGCGAGAACCAAAACCAAAACCAGAACCGGUUGAGACAGCUGAUAUUUGCAGGCUGUGCCCGCCUGCAACUGUCUGGGUAUUACACGACUGUCUCCCGCACAUUUCCACUACCA .......(((..............((((......))))((((((((.((((.((((((((.......)))))))).))))..(......)..).))))))).)))............... ( -33.70) >DroSec_CAF1 5921 120 - 1 GCGAGAGGCGAGAACCAAAACCAAAACCAGAACCGGUUGAGACAGCUGAUAUUUGCAGGCUGUGCCCGCCUGCAACUGUCUGGGUAUUACACGACUGUCUCCCGCACAUUUCCACUACCA (((.((((((.........(((..((((......)))).((((((.......((((((((.......)))))))))))))).)))..........)))))).)))............... ( -36.82) >DroSim_CAF1 14104 117 - 1 GCGAGAGGCGAGAACCAAAACCAAAACUAGAACCGGUUGAUACAGCUGAUAAUUGCAGGCUGUGCCAGCCAGCAA-UGUCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-- ((.....)).........((((............)))).......((((((.((((.(((((...))))).))))-))))))....................................-- ( -21.10) >consensus GCGAGAGGCGAGAACCAAAACCAAAACCAGAACCGGUUGAGACAGCUGAUAUUUGCAGGCUGUGCCCGCCUGCAACUGUCUGGGUAUUACACGACUGUCUCCCGCACAUUUCCACUACCA ((.....)).................(((((..((((((...))))))....((((((((.......))))))))...)))))..................................... (-21.92 = -22.37 + 0.45)
Location | 18,060,892 – 18,061,012 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.43 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -32.31 |
Energy contribution | -32.20 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.22 |
Structure conservation index | 0.89 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677300 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18060892 120 - 22224390 GCUGGGUUGGCCCUUAAGGAGGCGGCCACAUUGGGGGUGGUCUGUGCUAACUAGGAGGCUGCCAUUUAAUGCCCAGAACCGAGAGGCGAGUGGCAAGAGGCGAGAGGCAAGAGGCAAGAG (((.(((((((((....))((((.(((........))).))))..)))))))....)))((((......((((.....((....)).....))))...(.(....).)....)))).... ( -40.10) >DroSec_CAF1 6041 98 - 1 GCUGGGUUGGCCCUUAAGGAGGGGGUCACAUUGAGGGUGGUCUGUGCUAACUAGGAGGCUGCCAUUUAAUGCCGAGAACCGAGAGGCGAGUGGCG----------------------GAG .((.(((((((((((.....)))))))).))).))((..((((.(........).))))..))......(((((....((....))....)))))----------------------... ( -34.40) >DroSim_CAF1 14221 98 - 1 GCUGGGUUGGCCCUUAAGGAGGGGGUCACAUUGAGGGUGGUCUGUGCUAAAUAGGAGGCUGCCAUUUAAUGCCGAGAACCGAGAGGCGAGUGGCG----------------------GAG .((.(((((((((((.....)))))))).))).))((..((((.(........).))))..))......(((((....((....))....)))))----------------------... ( -34.40) >consensus GCUGGGUUGGCCCUUAAGGAGGGGGUCACAUUGAGGGUGGUCUGUGCUAACUAGGAGGCUGCCAUUUAAUGCCGAGAACCGAGAGGCGAGUGGCG______________________GAG (((((..((((((((.....))))))))(((((((((..((((.(........).))))..)).))))))))).....((....)).....))).......................... (-32.31 = -32.20 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:10 2006