Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,058,903 – 18,059,023 |
Length | 120 |
Max. P | 0.639791 |
Location | 18,058,903 – 18,059,023 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -36.50 |
Consensus MFE | -35.13 |
Energy contribution | -35.47 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.96 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18058903 120 + 22224390 CUAAGAACGGCACUAGCACGCACACAUGAACGCCCUCGAAGAGGGGGCGUGGCAUGGGGAUAACGGUGAAGGAGGAUUGUCGUCGUUGGCGGGAAAAUGCACUCAAAAUGAAAAUGAAAU ....((...(((....(.(((...((((.((((((((.....))))))))..))))....(((((..((..........))..)))))))).)....)))..))................ ( -34.90) >DroSec_CAF1 3463 120 + 1 CUAAGAACGGCACUAGCACGCACACAUGAACGCCCUCGAAGAGGGGGCGUGGCAUGGGGCUAACGGUGAAGGAGGAUUGUCGUCGUUGGCGGGAAAAUGCACUCAAAAUGAAAAUGAAAU ....((...((....))..(((..((((.((((((((.....))))))))..))))..(((((((..((..........))..))))))).......)))..))................ ( -37.30) >DroSim_CAF1 11704 120 + 1 CUAAGAACGGCACUAGCACGCACACAUGAACGCCCUCGAAGAGGGGGCGUGGCAUGGGGCUAACGGUGAAGGAGGAUUGUCGUCGUUGGCGGGAAAAUGCACUCAAAAUGAAAAUGAAAU ....((...((....))..(((..((((.((((((((.....))))))))..))))..(((((((..((..........))..))))))).......)))..))................ ( -37.30) >consensus CUAAGAACGGCACUAGCACGCACACAUGAACGCCCUCGAAGAGGGGGCGUGGCAUGGGGCUAACGGUGAAGGAGGAUUGUCGUCGUUGGCGGGAAAAUGCACUCAAAAUGAAAAUGAAAU ....((...((....))..(((..((((.((((((((.....))))))))..))))..(((((((..((..........))..))))))).......)))..))................ (-35.13 = -35.47 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:02 2006