Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,055,421 – 18,055,541 |
Length | 120 |
Max. P | 0.989660 |
Location | 18,055,421 – 18,055,541 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -50.67 |
Consensus MFE | -49.42 |
Energy contribution | -49.20 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -3.53 |
Structure conservation index | 0.98 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989660 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18055421 120 + 22224390 UGUGGGCGCUUGGGGAAAAGCUGAGCACUCGAACCGAGCACCUGGCUGUGAGCUGCGGUGUGCGGUGAGUGCGGUGCGACACAAAACAUGACACAAACUUAAUUUCCCCAAGGCACAACA .((..((.((((((((((.((...((((((..((((.(((((((((.....)))).))))).))))))))))...))....((.....))............))))))))))))...)). ( -50.10) >DroSec_CAF1 121 120 + 1 UGUUGGCGCUUGGGGAAAAGCUGAGCACUCGAACCGAGCACCUGGCUGCGAGCUGCGGUGUGUGGUGAGUGCGGUGCGACACAAAACAUGACACAAACUUAAUUUCCCCAAGGCACAACA .((((((.((((((((((.((...((((((..((((.(((((((((.....)))).))))).))))))))))...))....((.....))............)))))))))))).)))). ( -51.80) >DroSim_CAF1 120 120 + 1 UGUGGGCGCUUGGGGAAAAGCUGAGCACUCGAACCGAGCACCUGGCUGCGAGCUGCGGUGUGCGGUGAGUGCGGUGCGACACAAAACAUGACACAAACUUAAUUUCCCCAAGGCACAACA .((..((.((((((((((.((...((((((..((((.(((((((((.....)))).))))).))))))))))...))....((.....))............))))))))))))...)). ( -50.10) >consensus UGUGGGCGCUUGGGGAAAAGCUGAGCACUCGAACCGAGCACCUGGCUGCGAGCUGCGGUGUGCGGUGAGUGCGGUGCGACACAAAACAUGACACAAACUUAAUUUCCCCAAGGCACAACA .((..((.((((((((((.((...((((((..((((.(((((((((.....)))).))))).))))))))))...))....((.....))............))))))))))))...)). (-49.42 = -49.20 + -0.22)
Location | 18,055,421 – 18,055,541 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -49.63 |
Consensus MFE | -47.47 |
Energy contribution | -47.80 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.72 |
Structure conservation index | 0.96 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984753 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18055421 120 - 22224390 UGUUGUGCCUUGGGGAAAUUAAGUUUGUGUCAUGUUUUGUGUCGCACCGCACUCACCGCACACCGCAGCUCACAGCCAGGUGCUCGGUUCGAGUGCUCAGCUUUUCCCCAAGCGCCCACA .((.(.((((((((((((...((((((((.(((.....))).))))..((((((((((..((((...((.....))..))))..))))..))))))..)))))))))))))).))).)). ( -49.40) >DroSec_CAF1 121 120 - 1 UGUUGUGCCUUGGGGAAAUUAAGUUUGUGUCAUGUUUUGUGUCGCACCGCACUCACCACACACCGCAGCUCGCAGCCAGGUGCUCGGUUCGAGUGCUCAGCUUUUCCCCAAGCGCCAACA .((((.((((((((((((...((((((((.(((.....))).))))..(((((((((...((((...((.....))..))))...)))..))))))..)))))))))))))).)))))). ( -50.10) >DroSim_CAF1 120 120 - 1 UGUUGUGCCUUGGGGAAAUUAAGUUUGUGUCAUGUUUUGUGUCGCACCGCACUCACCGCACACCGCAGCUCGCAGCCAGGUGCUCGGUUCGAGUGCUCAGCUUUUCCCCAAGCGCCCACA .((.(.((((((((((((...((((((((.(((.....))).))))..((((((((((..((((...((.....))..))))..))))..))))))..)))))))))))))).))).)). ( -49.40) >consensus UGUUGUGCCUUGGGGAAAUUAAGUUUGUGUCAUGUUUUGUGUCGCACCGCACUCACCGCACACCGCAGCUCGCAGCCAGGUGCUCGGUUCGAGUGCUCAGCUUUUCCCCAAGCGCCCACA .((.(.((((((((((((...((((((((.(((.....))).))))..((((((((((..((((...((.....))..))))..))))..))))))..)))))))))))))).))).)). (-47.47 = -47.80 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:50 2006