Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,032,405 – 18,032,509 |
Length | 104 |
Max. P | 0.765050 |
Location | 18,032,405 – 18,032,509 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 83.81 |
Mean single sequence MFE | -21.26 |
Consensus MFE | -14.71 |
Energy contribution | -14.78 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.87 |
Structure conservation index | 0.69 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18032405 104 + 22224390 GGCGUAUCUAUUAGAUAACCAAAUAGUUAAAUGUAUGUACGUUUAAACUAAAUAUUUGAUAUGGAGUUUACACCACUCUAUAGACACCUCCAUGCAAAGGUAAC ....((((.....))))(((...(((((((((((....)))))).)))))....((((.(((((((.....................))))))))))))))... ( -19.90) >DroSec_CAF1 20396 92 + 1 GUUGUAUCUAUUAGAUAGCCAAAUAGUUAAAUGCAUGUACGUUUAAACUAAAUAUUUGAUAUGGAGUUUACAUAACU------------CCAUGCAAAGGUAAC ....((((.....))))(((...((((((((((......))))).)))))....((((.(((((((((.....))))------------))))))))))))... ( -23.40) >DroSim_CAF1 20705 104 + 1 GUUGUAUCUAUUAGAUAGCCAAAUAGUUAAAUGCAUGUACGUUUAAUCUAAAUAUUUGAUAUGGAGUUUACAUAACUCUAUAGACACCUCCAUGCAAAGGUAAC (((.((((.....))))..((((((((((((((......)))))))).....)))))).(((((((((.....))))))))))))((((........))))... ( -20.30) >DroYak_CAF1 20160 104 + 1 GUUGCAUCUAUUAGAUAGCCAAAUAGUUAGAUGUAUGCAUGUUUAAACUAAAUAUUUAAUAUGGUGUUCAGCUAGCUGCGAACACACCUCCAUGUAAAGGUAAC ..(((((((((((..........))).))))))))..((((((..............))))))((((((.((.....))))))))((((........))))... ( -21.44) >consensus GUUGUAUCUAUUAGAUAGCCAAAUAGUUAAAUGCAUGUACGUUUAAACUAAAUAUUUGAUAUGGAGUUUACAUAACUCUAUAGACACCUCCAUGCAAAGGUAAC ....((((.....))))(((...((((((((((......))))))).)))....((((.(((((((.....................))))))))))))))... (-14.71 = -14.78 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:42 2006