Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,982,969 – 1,983,074 |
Length | 105 |
Max. P | 0.528200 |
Location | 1,982,969 – 1,983,074 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -36.33 |
Consensus MFE | -32.61 |
Energy contribution | -32.83 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -1.73 |
Structure conservation index | 0.90 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1982969 105 + 22224390 GCGCUCCUGGAUCCUUGGCCUCGCCAGGUGGCGGGACCUCCUUAAUGGACUCCACCUUGGCCACAAUUUUAAGAGCUGGACCCAGCUUCAUGCCCAUAGCGUUCA (((((..(((.....(((((.((((....))))(((..(((.....))).))).....))))).........((((((....)))))).....))).)))))... ( -37.80) >DroSec_CAF1 16416 105 + 1 GCGCUCCUGGAUCCUUGGCCUCGCCAGGUGGCGGGACCUCCUUAAUGGACUCCACCUUGGCCACAAUUUUAAGAGCUGGACCCAGCUUCAUGCCCAUAGCGUUCA (((((..(((.....(((((.((((....))))(((..(((.....))).))).....))))).........((((((....)))))).....))).)))))... ( -37.80) >DroYak_CAF1 16849 105 + 1 GCGUCCCUGGAUCCUUGGCCUCGCCAGGUGGCGGAACCUCCUUAAUGGACUCCACCUUUGCCACAAUUUUGAGGGCUGGACCCAGCUUCAUGCCCAUAGCGUUUA ((((..((((.(((..(.(((((....((((((((...(((.....))).......)))))))).....))))).).))).))))....))))............ ( -33.40) >consensus GCGCUCCUGGAUCCUUGGCCUCGCCAGGUGGCGGGACCUCCUUAAUGGACUCCACCUUGGCCACAAUUUUAAGAGCUGGACCCAGCUUCAUGCCCAUAGCGUUCA (((((..(((.....(((((.....((((((.(...((........)).).)))))).))))).........((((((....)))))).....))).)))))... (-32.61 = -32.83 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:00 2006