Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 318,089 – 318,188 |
Length | 99 |
Max. P | 0.861029 |
Location | 318,089 – 318,188 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 93.77 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -18.66 |
Energy contribution | -18.98 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.06 |
Mean z-score | -2.32 |
Structure conservation index | 0.82 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 318089 99 + 22224390 AAUCAACAGCUUAGUAAAACAUCAGUGCCUGCUAAAAAAUGCAAGACCAACAAGAAGUUGGCGGUUGAAAGGCCCCCAAAAGCAGGAACUAUAAGCCAC ........((((((.....)...(((.((((((...........(.(((((.....))))))((((....))))......)))))).))).)))))... ( -26.00) >DroSec_CAF1 61045 99 + 1 AAUCAACAGCUUAGUAAAACAUCAGUGCCUGCUAAAAAAUGCAAGACCAACAAGAAGUUGGCGGUUGAAAGGCCCCCAAAAGCAGGAACUAUAUGCCAC ........((.((((...((....)).((((((...........(.(((((.....))))))((((....))))......)))))).))))...))... ( -23.20) >DroSim_CAF1 81689 99 + 1 AAUCAACAGCUUAGUAAAACAUCAGUGCCUGCUAAAAAAUGCAAGACCAACAAGAAGUUGGCGGUUGAAAGGCCCCCAAAAGCAGGAACUAUAUGCCAC ........((.((((...((....)).((((((...........(.(((((.....))))))((((....))))......)))))).))))...))... ( -23.20) >DroYak_CAF1 82416 99 + 1 AAUCAACAGCCCACUAAAACUUCAGUGCCUGCCAAAAAGUGCAAGACCAACAAGAAGUUGGCGGUGGAAAAGCCCCCAAAAGCAGCAGCUAUAAGCCAU .......((((((((..........(((((.......)).))).(.(((((.....)))))))))))....((........))....)))......... ( -19.10) >consensus AAUCAACAGCUUAGUAAAACAUCAGUGCCUGCUAAAAAAUGCAAGACCAACAAGAAGUUGGCGGUUGAAAGGCCCCCAAAAGCAGGAACUAUAAGCCAC .......................(((.((((((...........(.(((((.....))))))(((......)))......)))))).)))......... (-18.66 = -18.98 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:07 2006