Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,014,441 – 18,014,536 |
Length | 95 |
Max. P | 0.582916 |
Location | 18,014,441 – 18,014,536 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 88.78 |
Mean single sequence MFE | -23.95 |
Consensus MFE | -17.73 |
Energy contribution | -18.48 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.74 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18014441 95 - 22224390 --------------AAUUCCUUCUGGCUUCUUGCCUUUGUGCCUUGUGCUCAUCAUCAUUUGCCGGG-GCAGAGAAAUCGCAAUGGAAUCAGAUUUUUGCCUCUUUUCUC --------------.......((((..(((((((.....(((((((.((............))))))-)))((....)))))).)))..))))................. ( -25.00) >DroSec_CAF1 1798 95 - 1 --------------GAUUCCUUCUCGCUUCUUGCCUUUGUGCUUUAUGCUCAUCAUCAUUUGCCGGG-GCAGAGAAAUCGCAAUGGAAUCAGAUUUUUGCCUCUUUUCUC --------------((((((.....((.....))..(((((.(((.(((((..((.....))...))-)))...))).))))).)))))).................... ( -20.80) >DroSim_CAF1 3058 95 - 1 --------------GAUUCCUUCUGGCUUCUUGCCUUUGUGCUUUAUGCUCAUCAUCAUUUGCCGGG-GCAGAGAAAUCGCAAUGGAAUCAGAUUUUUGCCUCUUUUCUC --------------((((((....(((.....))).(((((.(((.(((((..((.....))...))-)))...))).))))).)))))).................... ( -24.20) >DroYak_CAF1 1821 110 - 1 GAUGCCUGAUGCCUGAUUCCUUCUGGCUUCUUGCCUUUGUGCUUUAUGCUCAUCAUCAUUUGACGGGGGCGGAAAAAUCGCAAUGGAAUCUGAUUUUUGCCUCUUUUCUC ((.((..((.....((((((....(((.....))).(((((.(((.(((((.(((.....)))...)))))...))).))))).))))))....))..)).))....... ( -25.80) >consensus ______________GAUUCCUUCUGGCUUCUUGCCUUUGUGCUUUAUGCUCAUCAUCAUUUGCCGGG_GCAGAGAAAUCGCAAUGGAAUCAGAUUUUUGCCUCUUUUCUC ..............((((((..(((((....((....((.((.....)).))....))...)))))..((.((....))))...)))))).................... (-17.73 = -18.48 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:31 2006