Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,979,708 – 1,979,823 |
Length | 115 |
Max. P | 0.638857 |
Location | 1,979,708 – 1,979,823 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -33.32 |
Consensus MFE | -29.29 |
Energy contribution | -30.18 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.88 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1979708 115 + 22224390 UUGGGGUUGGAAUGAAACGGCAGCAGU-----UGACAAAGCAAAACCAAAACGAGUAAAAAAAACAGGAAUCAAGACUACAGCUGGCGGGCAUGUGUAUGCGUGCUCAACCACCCCGACU (((((((.((........(.((((.((-----(.....)))....((...................)).............)))).)((((((((....))))))))..))))))))).. ( -33.91) >DroSec_CAF1 12764 120 + 1 UUGGGGUUGGAAUGAAACGGCAGCAGUUCGUUUGACAAAGCAAAACCAAAACGAGUAAAAAAAACUGGAAUCAAGACUACAGCUGGCGGGCAUGUGUAUGCGAACUCAACCACCCCGACU (((((((.((..(((..((.((((..(((((((...............))))))).........((.......))......)))).)).((((....))))....))).))))))))).. ( -30.96) >DroYak_CAF1 12884 120 + 1 UUGGGGUUGGAAUGAAACGGCAGCAGUUCGUUUGACAAAGCAAAAGCAAAUCGAGUAAAAAAAACAGGAAUCGAGACUACAGCUGGCGGGCAUGUGUGUGCGUGUUCAACCACCCCGACA (((((((.((........(.((((.....((((....)))).........((((................)))).......)))).)((((((((....))))))))..))))))))).. ( -35.09) >consensus UUGGGGUUGGAAUGAAACGGCAGCAGUUCGUUUGACAAAGCAAAACCAAAACGAGUAAAAAAAACAGGAAUCAAGACUACAGCUGGCGGGCAUGUGUAUGCGUGCUCAACCACCCCGACU (((((((.((........(.((((.((...(((((...................................)))))...)).)))).)((((((((....))))))))..))))))))).. (-29.29 = -30.18 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:59 2006