Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,996,501 – 17,996,599 |
Length | 98 |
Max. P | 0.999895 |
Location | 17,996,501 – 17,996,599 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.00 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -16.82 |
Energy contribution | -15.93 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.14 |
Mean z-score | -2.51 |
Structure conservation index | 0.61 |
SVM decision value | 4.42 |
SVM RNA-class probability | 0.999895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17996501 98 + 22224390 UUGAGCUUGGCUAAA--AAAGCGUUGGCAUU-----------------CCGAAGGAUAUUAUAGCCCAAGCUAUAAACU---UGGCUGUAAAUCGGAAUGCUUAAGUUCUAGACAUCAAA ..((((((((((...--..)))...((((((-----------------((((......((((((((.(((.......))---))))))))).)))))))))))))))))........... ( -32.40) >DroSec_CAF1 8580 117 + 1 UUGAGCUUGGCUAAAAAAAAGCGUUGGCAUUUCAGUGGCAUAGAUAUUUCGAAGGAUAUUAUAGCCCGAGCUAUAAACU---UGGCUAUAAAUCAGUACGCUUAAGUUCUAGAAAUCAAG ..(((((((..........(((((((.(((....))).))..(((...((....))..((((((((.(((.......))---))))))))))))...))))))))))))........... ( -25.80) >DroEre_CAF1 9432 102 + 1 UUUAGCUUGGCUAAA--A-AACGUUGGCUUUUCAGUGGCAUAG---------------UUAUAGCUCGAGCACUAAACUGAUUGGCUAUAAAUAAGAUCGCUAAAAUGCCAGAAAUCAAA ((((((...))))))--.-....(((((.(((.((((((.((.---------------(((((((.(((.((......)).)))))))))).)).).))))).))).)))))........ ( -24.90) >consensus UUGAGCUUGGCUAAA__AAAGCGUUGGCAUUUCAGUGGCAUAG______CGAAGGAUAUUAUAGCCCGAGCUAUAAACU___UGGCUAUAAAUCAGAACGCUUAAGUUCUAGAAAUCAAA ((((((...(((((.........)))))..............................((((((((..((.......))....))))))))........))))))............... (-16.82 = -15.93 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:10 2006