Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,983,371 – 17,983,490 |
Length | 119 |
Max. P | 0.813507 |
Location | 17,983,371 – 17,983,490 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.82 |
Mean single sequence MFE | -35.22 |
Consensus MFE | -27.10 |
Energy contribution | -27.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.77 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813507 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17983371 119 + 22224390 CCUCCCAUCCCACCACCACGUACCCCUAUGUCCACAUGCUGUAAACUGGGGCCAGGCAACUUUGCCAAUAAUAAAGCGCCAUUAGUGCUGCUACAUAAAGUGGGUUUGGGG-CCAGGGAU ..((((.(((((...((((...((((...((..((.....))..)).))))...((((....))))........(((((.....)))))..........))))...)))))-...)))). ( -37.40) >DroSim_CAF1 14032 111 + 1 CC---------CCCUCCACGUACCCCUAUGUCCACAUGCUGUAAACUGGGGCCAGGCAACUUUGCCAAUAAUAAAGCGCCAUUAGUGCUGCUACAUAAAGUGGGUUUGGGGUCCAGGGAU ..---------((((....(.(((((....(((((....((((......(((.((....))..)))........(((((.....)))))..))))....)))))...))))).))))).. ( -33.90) >DroEre_CAF1 15104 105 + 1 C-----UU----ACCCCACAUACCCCUAAGUCCACAUCCUGUAAACUGGGGCCAGGCAACUUUGCCAAUAAUAAAGCGCCAUUAGUGCUGCUACAUAAAGUGGGGU-GGGG-UCGA---- (-----((----(((((((...((((..(((..((.....))..)))))))...((((....))))........(((((.....)))))..........)))))))-))).-....---- ( -36.80) >DroYak_CAF1 13404 107 + 1 C-----------CCCACACUUACCCCUAUGUCCACAUCCUGUAAACUGGGGCCAGGCAACUUUGCCAAUAAUAAAGCGCCAUUAGUGCUGCUACAUAAAGUGGGUU-GGGG-CCGGUGCU .-----------....((((..((((....(((((..((........))(((..((((....))))........(((((.....)))))))).......)))))..-))))-..)))).. ( -32.80) >consensus C___________CCCCCACGUACCCCUAUGUCCACAUCCUGUAAACUGGGGCCAGGCAACUUUGCCAAUAAUAAAGCGCCAUUAGUGCUGCUACAUAAAGUGGGUU_GGGG_CCAGGGAU ......................((((....(((((....((((......(((.((....))..)))........(((((.....)))))..))))....)))))...))))......... (-27.10 = -27.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:59 2006