Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,978,559 – 17,978,679 |
Length | 120 |
Max. P | 0.943501 |
Location | 17,978,559 – 17,978,679 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.71 |
Mean single sequence MFE | -32.94 |
Consensus MFE | -17.56 |
Energy contribution | -17.76 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.13 |
Mean z-score | -2.99 |
Structure conservation index | 0.53 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17978559 120 + 22224390 AGCUCACAAAGUGUACGAGAUACAGUGCUGGGCAGCAGUAUCUGCUUAGUGGUAGAUAGUAUCUACUAGAUACUUUAUCCGCAAAGGUGUCUAAAAGUAUGCAGUGAAAGAUAUUACUUC ...((((...((((((.((((((..((((....)))).((((((((....))))))))))))))..((((((((((.......))))))))))...)))))).))))............. ( -36.70) >DroSec_CAF1 9470 105 + 1 AGCUCACAAAGUGUACGAGAUACAGUGUUGGGCAACAGUAUCUGCUUGGUGGUAG--------------AUACUUUAUCUUCAAAGGUGUCUAAAAGUAUGCAGUGAAAGAUA-UACUUG ...((((...((((((.((((((..((..((..((.((((((((((....)))))--------------)))))))..)).))...))))))....)))))).))))......-...... ( -30.80) >DroSim_CAF1 9167 106 + 1 AGCUCACAAAGUGUACGCGAUACAGUGUUGGGCAACAGUAUCUGCUUGGUGGUAG--------------AUACUUUAUCUUCAAAGGUGUCUAAAAGUAUGCAGUGAAAGAUAUUACUUG .(((((((..((((.....))))..)).)))))...((((((((((....)))))--------------))))).((((((((...(((((.....).))))..)).))))))....... ( -28.50) >DroEre_CAF1 10772 103 + 1 AGCUCACAAAGUGUACGAGAUACAGUGCUGGCCAGCAGUAUCUGCAU---GGUAG--------------AUAUUUUAACGGCCAAGGUGUCUAAAAGUAUGCUGUGAAAGCUAUUACAUU ((((..((.(((((((.((((((.....(((((...(((((((((..---.))))--------------))))).....)))))..))))))....))))))).))..))))........ ( -34.50) >DroYak_CAF1 8521 104 + 1 AGCUCGCAAAGUGUACGAGAUACAGUGCUGGGCAGCAGUAUCUGCAUUCUGGUAG--------------AUACUUUAUCUGCAACAGUG--UAGAACUGUGCAGUAAAAGAUAUUACAAU .(((((((..((((.....))))..))).)))).(((((.((((((((...((((--------------(((...)))))))...))))--)))))))))...((((......))))... ( -34.20) >consensus AGCUCACAAAGUGUACGAGAUACAGUGCUGGGCAGCAGUAUCUGCUUGGUGGUAG______________AUACUUUAUCUGCAAAGGUGUCUAAAAGUAUGCAGUGAAAGAUAUUACUUG ...((((...(..(((.(((((((.((((....)))).)..((((......))))...............................))))))....)))..).))))............. (-17.56 = -17.76 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:53 2006