Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,939,556 – 17,939,666 |
Length | 110 |
Max. P | 0.916160 |
Location | 17,939,556 – 17,939,666 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 96.35 |
Mean single sequence MFE | -11.33 |
Consensus MFE | -10.69 |
Energy contribution | -10.95 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.94 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916160 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17939556 110 - 22224390 AAUCAAAAUCAAACUCAGACUCAAACUCAAACUCAACUGCUUAUAAAUAAUUCAGAUCAACGAUUCAAAACAACAGCCAAACAUCUGAACGCCUUGAUGAAUUAUUUAUU ..........................................((((((((((((..((((((.((((..................))))))..)))))))))))))))). ( -11.67) >DroSec_CAF1 2399 109 - 1 AAUCAAAAUCAAACUCAGACUCAAACUCAAACUCAACUGC-UAUAAAUAAUUCAGAUCAACGAUUCAAAACAACAGCCAAACAUCUGAACGCCUUGAUGAAUUAUUUAUU ........................................-.((((((((((((..((((((.((((..................))))))..)))))))))))))))). ( -11.67) >DroSim_CAF1 2456 109 - 1 AAUCAAAAUCAAACUCAGACUCAAACUCAAACUCAACUGC-UAUAAAUAAUUCAGAUCAACGAUUCAAAACAACAGCCAAACAUCUGAACGCCUUGAUGAAUUAUUUAUU ........................................-.((((((((((((..((((((.((((..................))))))..)))))))))))))))). ( -11.67) >DroEre_CAF1 2491 109 - 1 AAUCAAACUCAGACUCAAACUCAAACUCAAACUCAACUGC-UAUAAAUAAUUCAGAUCAACGAUUCAAAACUACAGCCAAACAUCUGAACAUAUUGAUGAAUUAUUUAUU ........................................-.((((((((((((((........)).......(((........)))..........)))))))))))). ( -10.30) >consensus AAUCAAAAUCAAACUCAGACUCAAACUCAAACUCAACUGC_UAUAAAUAAUUCAGAUCAACGAUUCAAAACAACAGCCAAACAUCUGAACGCCUUGAUGAAUUAUUUAUU ..........................................((((((((((((..((((((.((((..................))))))..)))))))))))))))). (-10.69 = -10.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:14 2006