Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,922,551 – 17,922,654 |
Length | 103 |
Max. P | 0.500000 |
Location | 17,922,551 – 17,922,654 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 84.01 |
Mean single sequence MFE | -35.28 |
Consensus MFE | -25.10 |
Energy contribution | -26.72 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.15 |
Mean z-score | -1.43 |
Structure conservation index | 0.71 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17922551 103 + 22224390 A--GCGUACGGCUAAUUAAAGCCAAACAAGCGAGCCGGCCAUCUUCGAUCGGAGGAAGCCCUUCCGGGCCACGCGGAUUGGCUAUCUCUAGAACGCUAAUCGCCA (--((((.(((((......))))........(((..((((((((.((.(((((((.....)))))))....)).))).)))))..)))..).)))))........ ( -35.80) >DroSec_CAF1 16745 103 + 1 GGGGCGUGCGGCUAAUUAAAGCCAAACAAGCGAGCGGGCCAUCUUCGAUCGGAGGAAGCCCUUCCGGGCCACGCGGAUUGGCUAUCU--UGAACGCUAAUCGCCA ..((((.((((((......))))...((((..(((((((..(((((....)))))..)))).(((((....).))))...)))..))--))...))....)))). ( -40.10) >DroEre_CAF1 18004 96 + 1 G--GUGUGCGGCUAAUUAAAUCCAAACAAGCGGGCC-----CCUUCGAUCGAAGGAAGCUCUUCCGGGGACCGCGGAUUCUCUAUCU--CGAUCGGUAAUCGCCA (--(((....((..(((............((((.((-----(((((....)))((((....)))))))).))))((((.....))))--.)))..))...)))). ( -31.50) >DroYak_CAF1 15989 96 + 1 G--GCGUGCGGCUAAUUAAAUCCAAACAAGCGGGCC-----CCUUCGAUCGGAGGAAGCCCUUCCGGGGACCGCGGAUUCCAUAUCU--CGAUCGCUAAUCGCCA (--(((.((((..................((((.((-----(((((....)))((((....)))))))).))))((((.....))))--...))))....)))). ( -33.70) >consensus G__GCGUGCGGCUAAUUAAAGCCAAACAAGCGAGCC_____CCUUCGAUCGGAGGAAGCCCUUCCGGGCAACGCGGAUUCGCUAUCU__CGAACGCUAAUCGCCA .........(((.................((((........(((((....)))))..((((....)))).)))).(((((((.(((....))).)))))))))). (-25.10 = -26.72 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:04 2006