Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,965,051 – 1,965,147 |
Length | 96 |
Max. P | 0.684342 |
Location | 1,965,051 – 1,965,147 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -36.58 |
Consensus MFE | -17.09 |
Energy contribution | -18.48 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.23 |
Mean z-score | -2.15 |
Structure conservation index | 0.47 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1965051 96 + 22224390 GAAACAUGCCUGCUUUGCCUU--GGCGCGGGCAAACU--------GCUUGCGCCAGGAGCUUCAACC--AGGUCA-AGCAG------UGCAGCAGUUCCAGUUUCAGCGUAAUUC (((((.(((((((((.(((((--(((((((((.....--------))))))))))((........))--)))).)-)))))------.)))(......).))))).......... ( -39.70) >DroSec_CAF1 27290 93 + 1 GAAACAUGCCUGCUUUGCCUU--GGCGCGGGCAAACU--------GCUUGCGCCAGGAGCUUCAACC--AGGUCA-AGCAG------UGC---AGUUCCAGUUUCAGCGUAAUUC (((((.(((((((((.(((((--(((((((((.....--------))))))))))((........))--)))).)-)))))------.))---)......))))).......... ( -40.30) >DroSim_CAF1 8160 93 + 1 GAAACAUGCCUGCUUUGCCUU--GGCGCGGGCAAACU--------GCUUGCGCCAGGAGCUUCAACC--AGGUCA-AGCAG------UGC---AGUUCCAGUUUCAGCGUAAUUC (((((.(((((((((.(((((--(((((((((.....--------))))))))))((........))--)))).)-)))))------.))---)......))))).......... ( -40.30) >DroEre_CAF1 28691 93 + 1 GAGAUAUGCCUGCAUUGCCUC--GGCGCGGGCAAACU--------GCUUGCGGCAGGAGCUUCAACC--AGGUCA-AGCAG------UGC---AGUUCCAGUUUCAGCGUAAUUC (((((....(((((((((...--(.(((((((.....--------))))))).)..((.((......--)).)).-.))))------)))---)).....))))).......... ( -32.80) >DroYak_CAF1 28194 93 + 1 GAGACAUGCCUGACUUGCCUC--GGCACGGGCACACU--------GCUUGCGGCAGGAGCUUCAACC--AGGUCA-AGCAG------UGC---AGUUCCAGUUUCAGCGUAAUUC (((((.((((((...(((...--.)))))))))((((--------(((((.(.(.((........))--.).)))-)))))------)).---.......))))).......... ( -31.50) >DroPer_CAF1 35990 112 + 1 GGUAUAUGCGUGACCUGUCACCCAGUGCUGCAGAACUAAAGCCGAGGAAGCCGCAGUGGCUCCAACAGCACCUCGUGGCCGUGCGCAAGC---AGUUCAAGCUGCCGUGUAAAUC (((.((((((((..(.(((((...((((((.....(.......).(((.(((.....))))))..))))))...))))).)..)))..((---(((....))))).))))).))) ( -34.90) >consensus GAAACAUGCCUGCUUUGCCUC__GGCGCGGGCAAACU________GCUUGCGCCAGGAGCUUCAACC__AGGUCA_AGCAG______UGC___AGUUCCAGUUUCAGCGUAAUUC (((((.(((((((...(((....))))))))))......................((((((...((.....))....(((.......)))...)))))).))))).......... (-17.09 = -18.48 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:45 2006