Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,785,124 – 17,785,233 |
Length | 109 |
Max. P | 0.588242 |
Location | 17,785,124 – 17,785,233 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.91 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -22.41 |
Energy contribution | -22.60 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -1.10 |
Structure conservation index | 0.90 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17785124 109 - 22224390 AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCC-UUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAG---------- ...(((((........((((((((.((((...(((......)))..))))))))))-))....................((((((((....)))))))).))))).....---------- ( -25.30) >DroVir_CAF1 61629 109 - 1 AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCCUUCUUCC-UUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAU---------- ...(((((........((((((((.(.((...(((......)))..))).))))))-))....................((((((((....)))))))).))))).....---------- ( -23.50) >DroGri_CAF1 54701 109 - 1 AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCC-UUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAGCUAACUGUCAGGUAU---------- ...(((((........((((((((.((((...(((......)))..))))))))))-))....................((((((((....)))))))).))))).....---------- ( -25.30) >DroWil_CAF1 62308 119 - 1 AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCC-UUAUAGAAACAUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAACUAUAAGUGA ......(((.......((((((((.((((...(((......)))..))))))))))-))((((..((....((...((.((((((((....)))))))).)).)).))..))))..))). ( -26.30) >DroMoj_CAF1 54098 109 - 1 AAAUGGCACAAAAAUCGAGGAGGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCC-UUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAU---------- ...(((((........((((((((.((((...(((......)))..))))))))))-))....................((((((((....)))))))).))))).....---------- ( -25.00) >DroPer_CAF1 55519 110 - 1 AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCCAUUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAG---------- ...(((((..........((((((.((((...(((......)))..)))))))))).......................((((((((....)))))))).))))).....---------- ( -23.30) >consensus AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCC_UUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAU__________ ....(((((.....(((.......))).)))))(((((..(((...(.(((((........))))).)...))).....((((((((....)))))))).)))))............... (-22.41 = -22.60 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:56 2006