Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,784,989 – 17,785,097 |
Length | 108 |
Max. P | 0.981553 |
Location | 17,784,989 – 17,785,097 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 92.73 |
Mean single sequence MFE | -24.84 |
Consensus MFE | -22.46 |
Energy contribution | -22.38 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.69 |
Structure conservation index | 0.90 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17784989 108 + 22224390 ACAUAGCUUUU------UUUCAACGAGGAUGGAUAGAGAGAUAUUGUAUUCGAGUUCAAGUUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUAACUAGGUGUAUGCAUA .....((....------.........(((((((.((((((((((((.....(((......)))....)))))))))))))))))))((((((.......))))))....))... ( -24.30) >DroSec_CAF1 43661 107 + 1 ACAUAGCUUU-------UUUCAAGGAGGAUGGAUAGAGAGAUAUUGUAUUCGAGUUCAAGUUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUAACUAGGUGUAUGCAUA .....((...-------.........(((((((.((((((((((((.....(((......)))....)))))))))))))))))))((((((.......))))))....))... ( -24.30) >DroSim_CAF1 42078 107 + 1 ACAUAGCUUU-------UUUCAAGGAGGAUGGAUAGAGAGAUAUUGUAUUCGAGUUCAAGUUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUAACUAGGUGUAUGCAUA .....((...-------.........(((((((.((((((((((((.....(((......)))....)))))))))))))))))))((((((.......))))))....))... ( -24.30) >DroEre_CAF1 41876 107 + 1 ACAUAGUUUU-------UUUUAAGAAGGAUGGAUAGAGAGAUAUUGUAUUCGAGUUCAAGUUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUAAUUAGGUGUAUGCAUA ..........-------.........(((((((.((((((((((((.....(((......)))....)))))))))))))))))))((...(((((....)))))....))... ( -23.90) >DroYak_CAF1 42625 114 + 1 ACAUAGCGUUUUUUUUUUUGCAAGAAAAAUGGAUAGAGAGAUAUUGUAUUCGAGUUUAAGAUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUGACUAGGUGUAUGCAUA ......((((((((((.....))))))))))((.(((((((((((((..((........))....)).))))))))))).))((.((((((((....).)))))))...))... ( -27.40) >consensus ACAUAGCUUU_______UUUCAAGGAGGAUGGAUAGAGAGAUAUUGUAUUCGAGUUCAAGUUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUAACUAGGUGUAUGCAUA .....((...................(((((((.((((((((((((.....(((......)))....)))))))))))))))))))((((((.......))))))....))... (-22.46 = -22.38 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:55 2006