Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,767,616 – 17,767,729 |
Length | 113 |
Max. P | 0.523448 |
Location | 17,767,616 – 17,767,729 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 91.80 |
Mean single sequence MFE | -28.25 |
Consensus MFE | -21.50 |
Energy contribution | -22.00 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.76 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523448 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17767616 113 + 22224390 UGGGUAUUCUUUUUUAAGUGUACUCUCGUUACUUUUCUCACUCGAUUGAUCGCUAUAUCUGCGAU-UAGUGUGUGCUCACGGCGAUAGUGUGUGUAUGCAUUUCUUUUUGGGGG-- .((((((.(((....))).))))))...............(((((.(((((((.......)))))-))((((((((.((((.(....))))).))))))))......)))))..-- ( -30.60) >DroSec_CAF1 26539 112 + 1 AGGGUAUUCUUUUUUAAGUGUACUCUCGUUACUUUUAUCACUCGAUUGAUCGCUAUAUCUGCGAU-UAGUAAGUGCUCACGGCGAUAGUAUGUGUAUGCAUUUCUU-UUGGGGG-- (((((((.(((....))).)))))))..............(((((((((((((.......)))))-))))((((((.((((((....)).))))...))))))...-.))))..-- ( -28.70) >DroEre_CAF1 24971 109 + 1 UGGGUAUUCUU-UUUAAGUGUACUCUCGUUUCUUUUCUCACUCGAUUCAUCGCUAUAUCUGCGAUAUAGUGUGUGCUCACGGAGAUA---UGUGUAUGCAUUUCUU-UUGGGGA-- .((((((.((.-....)).)))))).........((((((...((..((((((((((((...))))))))).))).))..(((((.(---(((....)))).))))-)))))))-- ( -24.80) >DroYak_CAF1 25287 112 + 1 UGGGUAUUCUUUUUUAAGUGUACUCUCGUUACUUUUCUCACUCGAUUUAUCGCUAUAUCUGCGAUAUAGUGUGUGCUCACGGAGAUA---UGUGUAUGCAUUUCUU-UUGGGGGGA .((((((.(((....))).))))))..........((((.(((((..((((((.......)))))).(((((((((.((........---)).)))))))))....-))))))))) ( -28.90) >consensus UGGGUAUUCUUUUUUAAGUGUACUCUCGUUACUUUUCUCACUCGAUUGAUCGCUAUAUCUGCGAU_UAGUGUGUGCUCACGGAGAUA___UGUGUAUGCAUUUCUU_UUGGGGG__ .((((((.(((....))).))))))...............(((((...(((((.......)))))..(((((((((.((...........)).))))))))).....))))).... (-21.50 = -22.00 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:44 2006