Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,737,943 – 17,738,052 |
Length | 109 |
Max. P | 0.720294 |
Location | 17,737,943 – 17,738,052 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -36.30 |
Energy contribution | -36.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 1.00 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17737943 109 - 22224390 UGUAGAAAGAGAUAGAGAGAAGAGCGCUUAAUACUUCUGCUGCGGCACCAAUUGGGUGGCUAUGCCAGCGAAACUGGAGGCCACCGUGUUGAUCUCGACCUGCUUUAUC .((((...(((((..(((((((...........))))).)).(((((((....)(((((((...((((.....)))).))))))))))))))))))...))))...... ( -36.30) >DroSec_CAF1 32108 109 - 1 UGUAGAAAGAGAUAGAGAGAAGAGCGCUUAAUACUUCUGCUGCGGCACCAAUUGGGUGGCUAUGCCAGCGAAACUGGAGGCCACCGUGUUGAUCUCGACCUGCUUUAUC .((((...(((((..(((((((...........))))).)).(((((((....)(((((((...((((.....)))).))))))))))))))))))...))))...... ( -36.30) >DroSim_CAF1 33288 109 - 1 UGUAGAAAGAGAUAGAGAGAAGAGCGCUUAAUACUUCUGCUGCGGCACCAAUUGGGUGGCUAUGCCAGCGAAACUGGAGGCCACCGUGUUGAUCUCGACCUGCUUUAUC .((((...(((((..(((((((...........))))).)).(((((((....)(((((((...((((.....)))).))))))))))))))))))...))))...... ( -36.30) >consensus UGUAGAAAGAGAUAGAGAGAAGAGCGCUUAAUACUUCUGCUGCGGCACCAAUUGGGUGGCUAUGCCAGCGAAACUGGAGGCCACCGUGUUGAUCUCGACCUGCUUUAUC .((((...(((((..(((((((...........))))).)).(((((((....)(((((((...((((.....)))).))))))))))))))))))...))))...... (-36.30 = -36.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:30 2006