Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,705,641 – 17,705,761 |
Length | 120 |
Max. P | 0.679399 |
Location | 17,705,641 – 17,705,761 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.47 |
Mean single sequence MFE | -30.41 |
Consensus MFE | -26.50 |
Energy contribution | -27.02 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.08 |
Mean z-score | -1.30 |
Structure conservation index | 0.87 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679399 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17705641 120 + 22224390 GUUUUUUUUUUAUUGGGAAAAGUUGCGUGCAACUCGUAAGAACUCAAACUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAUUCGCCCCACCCACUCAAGGCGCAUAAUCACCGA ............((((((...(((((((((...((....)).......((.(((((((.........))))))))))))))))))...((((............)))).....)).)))) ( -28.70) >DroSec_CAF1 10020 117 + 1 GUUUU-AUUU--GGGGGAAAAGUUGCGUGCAACUCAUAAGAACUCAAACUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAUUCGCCCCACCCACUCAAGGCGCAUAAUCACCGA .....-...(--(((((((..(((((((((..((((((((((........................))))))))))))))))))).))).))))).........((.(......).)).. ( -31.66) >DroSim_CAF1 11157 118 + 1 GUUUUUUUUU--GGGGGAAAAGUUGCGUGCAACUCGUAAGAACUCAAACUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAUUCGCCCCACCCACUCAAGGCGCAUAAUCACCGA .........(--(((((((..(((((((((...((....)).......((.(((((((.........)))))))))))))))))).))).))))).........((.(......).)).. ( -31.70) >DroEre_CAF1 10874 114 + 1 GGUUUU------UGGGGAACAGUUGCGUGCAACUCCUGUGAACUUAAGCUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAAUCGCCCCACCCACUCAAGGCGCAUAAUCACCGA (((...------(((((....(((((((((.((....)).........((.(((((((.........)))))))))))))))))).....))))).((......)).........))).. ( -29.60) >DroYak_CAF1 10855 114 + 1 GGUUUU------UGGGGAAAAGUUGCGUGCAACUCGUAUGAACUCAAAGUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAAUCGCCCCACCCACAAAAGGCGCAUAAUCACCGA (((...------(((((....(((((((((..(((((((.........))))((((((.........)))))))))))))))))).....))))).((......)).........))).. ( -30.40) >consensus GUUUUU_UUU__UGGGGAAAAGUUGCGUGCAACUCGUAAGAACUCAAACUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAUUCGCCCCACCCACUCAAGGCGCAUAAUCACCGA .............((((....(((((((((..((((((((((........................))))))))))))))))))).....))))..........((.(......).)).. (-26.50 = -27.02 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:16 2006