Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,661,248 – 17,661,350 |
Length | 102 |
Max. P | 0.556275 |
Location | 17,661,248 – 17,661,350 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 99.35 |
Mean single sequence MFE | -24.70 |
Consensus MFE | -24.70 |
Energy contribution | -24.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 1.00 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17661248 102 + 22224390 AUCGCACUUGCCUUUCGCUGCCCCUUUCGUCGGCUGCUUUCCUCCGAUUAGAUUCGCGACACCCACACGGAUCCGAUCCAGAUUCCAAUUGCGAUUCCGAUC ((((((.(((....((((.(((.........))).))........(((..((((((.(.......).))))))..)))..))...))).))))))....... ( -24.80) >DroSec_CAF1 7718 102 + 1 AUCGCACUUGCCUUUCGCUGCCCCUUUCGUCGGCUGCUUUCCUCCGAUUAGAUUCGCGACACCCACACGGAUCCGAUCCAGAUUCCAAUUGCGAUUCCGAUC ((((((.(((....((((.(((.........))).))........(((..((((((.(.......).))))))..)))..))...))).))))))....... ( -24.80) >DroEre_CAF1 5393 102 + 1 AUCGCACUUGCCUUUCGCUGCCCCUUUCGUCGGCUGCUUUCCUCCGAUUAGAUUCGCGACACCCACACGGAUCCGAUCCUGAUUCCAAUUGCGAUUCCGAUC ((((((.(((....((((.(((.........))).))........(((..((((((.(.......).))))))..)))..))...))).))))))....... ( -24.60) >DroYak_CAF1 5188 102 + 1 AUCGCACUUGCCUUUCGCUGCCCCUUUCGUCGGCUGCUUUCCUCCGAUUAGAUUCGCGACACCCACACGGAUCCGAUCCUGAUUCCAAUUGCGAUUCCGAUC ((((((.(((....((((.(((.........))).))........(((..((((((.(.......).))))))..)))..))...))).))))))....... ( -24.60) >consensus AUCGCACUUGCCUUUCGCUGCCCCUUUCGUCGGCUGCUUUCCUCCGAUUAGAUUCGCGACACCCACACGGAUCCGAUCCAGAUUCCAAUUGCGAUUCCGAUC ((((((.(((....((((.(((.........))).))........(((..((((((.(.......).))))))..)))..))...))).))))))....... (-24.70 = -24.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:02 2006