Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,625,885 – 17,626,004 |
Length | 119 |
Max. P | 0.741386 |
Location | 17,625,885 – 17,626,004 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 94.68 |
Mean single sequence MFE | -37.08 |
Consensus MFE | -29.46 |
Energy contribution | -30.77 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.04 |
Mean z-score | -2.37 |
Structure conservation index | 0.79 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17625885 119 + 22224390 UGAAUAAAGUGCACGGCGGCAUAAAGGCCCCGGCCGGAAAACUUGUUUUCCAUUCCAAUUCGGCCAUUUGGAAAAUGCCAUUAUCUGCGCAAGCUCGACGCAAAGUUAAUGAAUGUAAU ....(((..(((.....(((((...(((....)))((((((....)))))).((((((.........)))))).))))).......((....)).....)))...)))........... ( -32.90) >DroSec_CAF1 21851 119 + 1 UGAAUAAAGUGCGCGGCGGCAUAAAGGCCCCGGCCGGAAAACUUGUUUUCCAUUCCAAUUUGGCCAUUUGGAAAAUGCCAUUAUCUGCGCAAGCUCGCCGCAAAGUUAAUGAAUGUAAU ............((((((((((...(((....)))((((((....)))))).((((((.........)))))).))))).......((....))..))))).................. ( -40.60) >DroEre_CAF1 24260 118 + 1 UGAAUAAAGUGCGCGGCGGC-UAAAGGCCGCUGCCGGAAAACUUGUUUUCCAUUCCAAUUUGGGCAUUUGGAAAAUGGCAUUAUCUGCGCAAGCUCGCCGCAAAGUUAAUGAAUGUAAU ....(((..(((((((((((-.....)))))((((((((((....)))))).((((((.........))))))...))))......((....)).)).))))...)))........... ( -39.00) >DroYak_CAF1 23303 119 + 1 UGAAUAAACUGCACGGCGGCAUAAAGGUCCUGGCCGGAAAACUUGUUUUCCAUUCCAAUUCGGUCAUUUGGAAAAUGGCAUUAUCUGCGCAAGCUCGCCGCAAAGUUAAUGAAUGUAAU ......((((.....(((((....((((....(((((((((....)))))).((((((.........))))))...)))...))))((....))..)))))..))))............ ( -35.80) >consensus UGAAUAAAGUGCACGGCGGCAUAAAGGCCCCGGCCGGAAAACUUGUUUUCCAUUCCAAUUCGGCCAUUUGGAAAAUGCCAUUAUCUGCGCAAGCUCGCCGCAAAGUUAAUGAAUGUAAU ............((((((((((...(((....)))((((((....)))))).((((((.........)))))).))))).......((....))..))))).................. (-29.46 = -30.77 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:53 2006