Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,602,656 – 17,602,758 |
Length | 102 |
Max. P | 0.567619 |
Location | 17,602,656 – 17,602,758 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.09 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -18.85 |
Energy contribution | -18.97 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.35 |
Structure conservation index | 0.87 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17602656 102 + 22224390 UUUUAUUUAAUCAGUGUGCAAAGACGCGUCGUUUGGUUAACGCCGGCCGACGGCUCAGCGAAGCAAAUAAAUAAAUACAAAUAACAA------------------ACACACAUAUUUUUU .............(((((........(((((..((((....))))..)))))(((......))).......................------------------.)))))......... ( -20.90) >DroSec_CAF1 21655 102 + 1 UUUUAUUUAAUCAGUGUGCAAAGACGCGUUGUUUGGUUAACGCCGGCCGACGGCUCAGCGAAGCAAAUAAAUAAAUACAAAUAGGAA------------------ACACACAUAUUUUUU .((((((((....((((......)))).((((((.(((...((((.....))))..))).)))))).))))))))........(...------------------.)............. ( -23.10) >DroYak_CAF1 32410 120 + 1 UUUUAUUUAAUCAGUGUGCAAAGACGCGUUGUUUGGUUAACGCCGGCCGACGGCUCAGCGAAACACAUAAAUUAAUACAAAUAAUAACCACAACACCACACACUCACACAAAUAUUUUUU ...(((((....(((((((......))(((((..(((((.(((.((((...))).).)))..........(((......)))..)))))))))).....))))).....)))))...... ( -20.80) >consensus UUUUAUUUAAUCAGUGUGCAAAGACGCGUUGUUUGGUUAACGCCGGCCGACGGCUCAGCGAAGCAAAUAAAUAAAUACAAAUAACAA__________________ACACACAUAUUUUUU .((((((((....((((......))))...((((.(((...((((.....))))..))).))))...))))))))............................................. (-18.85 = -18.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:47 2006