Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,592,035 – 17,592,154 |
Length | 119 |
Max. P | 0.998345 |
Location | 17,592,035 – 17,592,154 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 72.32 |
Mean single sequence MFE | -23.47 |
Consensus MFE | -15.57 |
Energy contribution | -17.45 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.24 |
Mean z-score | -2.31 |
Structure conservation index | 0.66 |
SVM decision value | 3.07 |
SVM RNA-class probability | 0.998345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17592035 119 + 22224390 AGGAACGCAUUAUUAACUUAGAAACUAAUUACAAAAUGUGGCAAUCAGUUUAGUUUCUUAAACUCAGUAGAGUGUUUUAGUAGAUAAUCAUCAUAACAUUGUAAUAGUGCGUUCUAAAU .(((((((((((((((((.(((((((((((((.....))))........)))))))))...((((....)))).....))).(((....))).........)))))))))))))).... ( -28.50) >DroSec_CAF1 11457 98 + 1 AGGAACGCAUUAUUAACUUAGAAACAAAUUAAA---------------------UUUUUAAUCUCAGUAAAGUGUUUUAGUAGAUAAUCAUCAUAACAUUGUAAUAGUGCGUUCUGAAU .(((((((((((((((((.(((...(((.....---------------------.)))...))).)))..((((((......(((....)))..)))))).)))))))))))))).... ( -21.80) >DroSim_CAF1 30056 119 + 1 AGGAACGCAUUAUUAACUUAGAAACGAAUUAAAAAAUAUGGCAAUCACAUUAGUUUCUUAAUUUCAGUAAAGUGUUUUAGUAGAUAAUCAUCAUAACAUUGUAAUAGUGCGUUCUGAAU .((((((((((((((..........(((((((.(((((((.......)))..)))).)))))))......((((((......(((....)))..)))))).)))))))))))))).... ( -23.80) >DroYak_CAF1 22432 100 + 1 -------UAUUAUUAACUAAGUAGCUAGCAAAA------GGCAAUUAGAUUAGUUGCUUAAACUCAGCAAGGUGUUUCACUA--UAAU----GUUAUAUUAUAAUAGUGCUUUCUGCUU -------...........((((((..(((...(------((((((((...)))))))))...................((((--(.((----(......))).))))))))..)))))) ( -19.80) >consensus AGGAACGCAUUAUUAACUUAGAAACUAAUUAAA______GGCAAUCAGAUUAGUUUCUUAAACUCAGUAAAGUGUUUUAGUAGAUAAUCAUCAUAACAUUGUAAUAGUGCGUUCUGAAU .((((((((((((((....(((((((((.....................)))))))))............((((((..................)))))).)))))))))))))).... (-15.57 = -17.45 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:26 2006