Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,590,683 – 17,590,796 |
Length | 113 |
Max. P | 0.998122 |
Location | 17,590,683 – 17,590,796 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.65 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -27.86 |
Energy contribution | -28.18 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -2.04 |
Structure conservation index | 0.91 |
SVM decision value | 3.01 |
SVM RNA-class probability | 0.998122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17590683 113 + 22224390 CAGUGGCCAAAA-------ACACAGAUCCGGUAAUCCCGGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCUAAACAACUAUUAGUGUGCCACUUUACAGGCAA .((((((.....-------((((.(((.((((....(((((......)))))..))))..)))....(((((.........)))))..............)))))))))).......... ( -28.60) >DroSec_CAF1 10057 113 + 1 CAGUGGCCAAAA-------ACAUAGAUCCGGUAAUCCCGGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCUAAACAACUAUUAGCGGGCCACUUUACAGGCAA .....(((....-------.....(..((((.....))))..)(((((((((((..((........))((((.........))))..........))))))))))).........))).. ( -32.80) >DroSim_CAF1 28675 113 + 1 CAGUGGCCAAAA-------ACACAGAUCCGGUAAUCCCGGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCUAAACAACUAUUAGCGGGCCACUUUACAGGCAA .....(((....-------.....(..((((.....))))..)(((((((((((..((........))((((.........))))..........))))))))))).........))).. ( -32.80) >DroEre_CAF1 9926 113 + 1 CAGUGGCCAAAA-------ACACAAAUCCCGUAAUCCCGGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCUAAACAACUAUUAGCGGGCCACUUUACAGGCAA .....(((....-------.........(((......)))...(((((((((((..((........))((((.........))))..........))))))))))).........))).. ( -29.50) >DroYak_CAF1 20666 120 + 1 CAGUGGCCAAAAACCCAAAACACAAAUCCGGUAAUCCUCGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCCAAACAACUAUUAGCGGGCCACUUUACAGGCAA .....(((.....................(((.......))).(((((((((((..((........))((((.........))))..........))))))))))).........))).. ( -28.80) >consensus CAGUGGCCAAAA_______ACACAGAUCCGGUAAUCCCGGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCUAAACAACUAUUAGCGGGCCACUUUACAGGCAA .....(((...................((((.....))))...(((((((((((..((........))((((.........))))..........))))))))))).........))).. (-27.86 = -28.18 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:24 2006