Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,587,541 – 17,587,660 |
Length | 119 |
Max. P | 0.544610 |
Location | 17,587,541 – 17,587,660 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.26 |
Mean single sequence MFE | -37.68 |
Consensus MFE | -34.35 |
Energy contribution | -34.60 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.25 |
Structure conservation index | 0.91 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544610 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17587541 119 - 22224390 GGCCAUUGGCAGCAGGUAGGUGUGGCCGCGGCCUACGUAGCAAAUUGUUUGGGGCGCAUUAGAUGGCUGCUUACCAGUGCCA-UUGCACUGAGAAUAAUAAUUAUUGCAGCCCAAUAUUA ((((((..((.....))....))))))(((.((((..(((....)))..)))).))).......((((((....((((((..-..))))))..((((.....))))))))))........ ( -41.10) >DroSec_CAF1 6933 119 - 1 GGCCAUUGGCAGCAGGUAGGUGUGGCCGCGGCCUACGUAGCAAAUUGUUUGGGGCGCAUUAGAUGGCUGCUUACCAGUGCCU-UUGCACUGAGAACUAUAAUUACUGCAGCCCAAUAUAA ((((((..((.....))....))))))(((.((((..(((....)))..)))).))).......((((((....((((((..-..))))))((...........))))))))........ ( -39.70) >DroEre_CAF1 6908 97 - 1 GGCCAUUGGCAGCAGGUAGGUGUGGCCGCGGCCUACGUAGCAAAUUGUUUGGGGCGCAUUAGAUGGCUGCUUACCAGUGCCGUUUGCACUGAGAGUC----------------------- ((((((((((.(((......))).)))(((.((((..(((....)))..)))).)))....)))))))((((..((((((.....)))))).)))).----------------------- ( -37.30) >DroYak_CAF1 17448 101 - 1 GGCCAUUGGCAGCAGGUAGGUGUGGCAGCGGCCUACGUAGCAAAUUGUUUGGGGCGCAUUAGAUGGCUGCUUACCAGUGCCC-AUGCACUGAGAAUAAUAAC------------------ (((((((.((.(((......))).)).(((.((((..(((....)))..)))).)))....)))))))......((((((..-..))))))...........------------------ ( -32.60) >consensus GGCCAUUGGCAGCAGGUAGGUGUGGCCGCGGCCUACGUAGCAAAUUGUUUGGGGCGCAUUAGAUGGCUGCUUACCAGUGCCA_UUGCACUGAGAAUAAUAAU__________________ ((((((((((.(((......))).)))(((.((((..(((....)))..)))).)))....)))))))......((((((.....))))))............................. (-34.35 = -34.60 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:16 2006